rpoA:Evolution: Difference between revisions

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{{Tab|Quickview|rpoA}}{{Tab|Gene|rpoA}}{{Tab|Gene Product(s)|rpoA}}{{Tab|Expression|rpoA}}{{Tab On|Evolution|rpoA}}{{Tab|On One Page|rpoA}}{{TabsBottom}}
{{Tab|Quickview|rpoA}}{{Tab|Gene|rpoA}}{{Tab|Gene Product(s)|rpoA}}{{Tab|Expression|rpoA}}{{Tab On|Evolution|rpoA}}{{Tab|On One Page|rpoA}}{{TabsBottom}}
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==Homologs in Other Organisms==
==Homologs in Other Organisms==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="U46abfaccd2dd3"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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|-  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
From SHIGELLACYC  
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''E. coli'' O157
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RPOA
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From ECOO157CYC
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.50549.U46abfaccd2dd3&page=50549&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table]</span> || ||
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417754&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417754&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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==Families==
==Families==
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|- {{table_heading_style}}
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF01000 PF01000  RNA polymerase Rpb3/RpoA insert domain]
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|-
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=47789 SUPERFAMILY:47789]
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|-
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11800:SF4 PTHR11800:SF4]
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|-
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=55257 SUPERFAMILY:55257]
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|-
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=56553 SUPERFAMILY:56553]
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|-  
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01193 PFAM:PF01193]
[http://pfam.janelia.org/family/PF03118 PF03118  Bacterial RNA polymerase, alpha chain C terminal domain]
|
|
   
   
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF01193 PF01193  RNA polymerase Rpb3/Rpb11 dimerisation domain]
|
|-
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[[EcoCyc]]
|
EcoCyc:EG10893
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[EcoGene]]
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EcoGene:EG10893
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[RegulonDB]]
|
RegulonDB:ECK120000884
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[EchoBASE]]
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EchoBASE:EB0886
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[ASAP]]
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ASAP:ABE-0010802
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===
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==Links==
==Links==
{{Evolution_links_default}}
{{BacktoTop}}
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==References==
==References==
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
[[Category:Genes with homologs in Oryza gramene ]][[Category:Genes with homologs in Xenopus tropicalis ]][[Category:Genes with homologs in Shigella flexneri ]][[Category:Genes with homologs in E. coli O157]]</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Genes with homologs in Oryza gramene ]]
[[Category:Genes with homologs in Xenopus tropicalis ]]
[[Category:Genes with homologs in Shigella flexneri ]]
[[Category:Genes with homologs in E. coli O157]]

Latest revision as of 08:36, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Oryza gramene

  • Q7GED1 (score: 1.000; bootstrap: 100%)
  • Q6YLW9 (score: 1.000; bootstrap: 100%)
  • Q6YLW3 (score: 1.000; bootstrap: 100%)
  • P12073 (score: 1.000; bootstrap: 100%)
  • Q7GED0 (score: 1.000; bootstrap: 100%)
  • Q6YLW2 (score: 1.000; bootstrap: 100%)
  • P92892 (score: 1.000; bootstrap: 100%)
  • Q7GED9 (score: 1.000; bootstrap: 100%)
  • P92429 (score: 1.000; bootstrap: 100%)
  • Q8MAJ0 (score: 1.000; bootstrap: 100%)
  • Q7H6I6 (score: 1.000; bootstrap: 100%)
  • Q7H6I3 (score: 1.000; bootstrap: 100%)
  • Q7H6I2 (score: 1.000; bootstrap: 100%)
  • Q7H6I1 (score: 1.000; bootstrap: 100%)
  • Q7H6H8 (score: 1.000; bootstrap: 100%)
  • Q7H6H6 (score: 1.000; bootstrap: 100%)
  • Q7H6H1 (score: 1.000; bootstrap: 100%)
  • Q7H6G9 (score: 1.000; bootstrap: 100%)
  • Q7H6G7 (score: 1.000; bootstrap: 100%)
  • Q7H6G6 (score: 1.000; bootstrap: 100%)
  • Q7H6G5 (score: 1.000; bootstrap: 100%)
  • Q7H6G4 (score: 1.000; bootstrap: 100%)
  • Q7H6G2 (score: 1.000; bootstrap: 100%)
  • Q7GED7 (score: 1.000; bootstrap: 100%)
  • Q7GEC5 (score: 1.000; bootstrap: 100%)
  • Q6USB6 (score: 1.000; bootstrap: 100%)
  • P92906 (score: 1.000; bootstrap: 100%)
  • Q7H6G1 (score: 1.000; bootstrap: 100%)
  • Q7H6I5 (score: 1.000; bootstrap: 100%)
  • P93993 (score: 1.000; bootstrap: 100%)
  • P93974 (score: 1.000; bootstrap: 100%)
  • Q7H6I8 (score: 1.000; bootstrap: 100%)
  • Q7H6F7 (score: 1.000; bootstrap: 100%)
  • Q7GEC8 (score: 1.000; bootstrap: 100%)
  • Q539W3 (score: 1.000; bootstrap: 100%)
  • Q539W0 (score: 1.000; bootstrap: 100%)
  • Q539V9 (score: 1.000; bootstrap: 100%)
  • Q539V7 (score: 1.000; bootstrap: 100%)
  • Q539V5 (score: 1.000; bootstrap: 100%)
  • P92903 (score: 1.000; bootstrap: 100%)
  • Q7H6F6 (score: 1.000; bootstrap: 100%)
  • Q6YLW4 (score: 1.000; bootstrap: 100%)
  • Q7GED2 (score: 1.000; bootstrap: 100%)
  • Q7H6H4 (score: 1.000; bootstrap: 100%)
  • Q7H6J3 (score: 1.000; bootstrap: 100%)
  • P93968 (score: 0.998)
  • P92418 (score: 0.998)
  • Q6YLW7 (score: 0.996)
  • Q6YLW6 (score: 0.996)
  • Q8MAI8 (score: 0.996)
  • P92209 (score: 0.996)
  • Q7H6I7 (score: 0.996)
  • Q7GEC7 (score: 0.996)
  • Q7GEC4 (score: 0.996)
  • P92900 (score: 0.996)
  • Q7H6J0 (score: 0.996)
  • Q7H6J1 (score: 0.996)
  • Q7H6J2 (score: 0.996)
  • Q539V4 (score: 0.996)
  • Q6YLV9 (score: 0.995)
  • Q540Z1 (score: 0.995)
  • P92439 (score: 0.995)
  • Q8MAI6 (score: 0.995)
  • P92220 (score: 0.995)
  • P93964 (score: 0.995)
  • Q6YLW5 (score: 0.995)
  • P93956 (score: 0.995)
  • P92392 (score: 0.995)
  • Q8MAI9 (score: 0.991)
  • Q539W2 (score: 0.991)
  • P93960 (score: 0.988)
  • P93962 (score: 0.988)
  • P92389 (score: 0.982)
  • Q539W1 (score: 0.982)
  • P92225 (score: 0.980)
  • Q539V6 (score: 0.922)
  • Q6L370 (score: 0.915)
  • Q6ENT2 (score: 0.915)
  • P09562 (score: 0.915)
  • Q6Z507 (score: 0.891)
  • Q6QY54 (score: 0.891)
  • P12090 (score: 0.891)
  • Q6ENE2 (score: 0.891)
  • Q8S1Q6 (score: 0.888)
  • Q7X6E0 (score: 0.877)
  • Q7DNA8 (score: 0.877)
  • Q8SAU1 (score: 0.875)
  • Q7G6A7 (score: 0.875)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000043398 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

RPOA

From SHIGELLACYC

E. coli O157

RPOA

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01000 RNA polymerase Rpb3/RpoA insert domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:47789

Panther (EcoliWiki Page)

PTHR11800:SF4

Superfamily (EcoliWiki Page)

SUPERFAMILY:55257

Superfamily (EcoliWiki Page)

SUPERFAMILY:56553

Pfam (EcoliWiki Page)

PF03118 Bacterial RNA polymerase, alpha chain C terminal domain

Pfam (EcoliWiki Page)

PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain

EcoCyc

EcoCyc:EG10893

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10893

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000884

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0886

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010802

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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