ompT:Quickview: Difference between revisions

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<noinclude>{{TabsTop}}   
<noinclude>{{TabsTop}}   
{{Tab On|Quickview|ompT}}{{Tab|Gene|ompT}}{{Tab|Gene Product(s)|ompT}}{{Tab|Expression|ompT}}{{Tab|Evolution|ompT}}{{Tab|On One Page|ompT}}{{TabsBottom}}
{{Tab On|Quickview|ompT}}{{Tab|Gene|ompT}}{{Tab|Gene Product(s)|ompT}}{{Tab|Expression|ompT}}{{Tab|Evolution|ompT}}{{Tab|On One Page|ompT}}{{TabsBottom}}
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{|   id="P49aeeecb1a75d"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[ompT:Gene|''ompT]]'' (synonyms: ''ECK0557, b0565, JW0554'')<ref name='LIB:Riley_2006'/>
''ompT''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[ompT:Gene_Product(s)|OmpT product]]<ref name='LIB:Riley_2006'/>: DLP12 prophage; outer membrane protease VII (outer membrane protein 3b)<ref name='LIB:Riley_2006'/>, B0565<ref name='LIB:EcoCyc10.6'/>, OmpT<ref name='LIB:EcoCyc10.6'/>, protease VII<ref name='LIB:EcoCyc10.6'/>, omptin<ref name='LIB:EcoCyc10.6'/>
''ECK0557, b0565, JW0554''<ref name='LIB:Riley_2006'/>, JW0554''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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outer membrane protein 3b (a), protease VII<ref name='LIB:EcoCyc10.6'/>outer membrane protease VII (outer membrane protein 3b)<ref name='LIB:EcoCyc11.1'/>
outer membrane protein 3b (a), protease VII<ref name='LIB:EcoCyc10.6'/>; outer membrane protease VII (outer membrane protein 3b)<ref name='LIB:EcoCyc11.1'/>
 


Outer membrane protease VII, DLP12 prophage; OM protein 2b; omptin<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''DLP12 prophage; outer membrane protease VII (outer membrane protein 3b)<ref name='LIB:Riley_2006'/>, B0565<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, OmpT<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, protease VII<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, omptin<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0557, JW0554, b0565''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:txn_units:ompT|ompT]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:txn_units:envY-ompT|envY-ompT]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ompT|ompT]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:envY-ompT|envY-ompT]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ompT&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10673]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000666&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ompT&loc=MG1655%3A584856..583903,W3110%3A584856..583903,DH10B%3A524188..523235,DH10B%3A637448..636495,REL606%3A560984..560031,BW2952%3A486663..487616]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=486663&end=487616&gene=ompT&aa=mrakllgivlttpiaissfastetlsftpdninadislgtlsgktkervylaeeggrkvsqldwkfnnaaiikgainwdlmpqisigaagwttlgsrggnmvdqdwmdssnpgtwtdesrhpdtqlnyanefdlnikgwllnepnyrlglmagyqesrysftarggsyiysseegfrddigsfpngeraigykqrfkmpyigltgsyryedfelggtfkysgwvessdndehydpgkrityrskvkdqnyysvavnagyyvtpnakvyvegawnrvtnkkgntslydhnnntsdyskngagienynfittaglkytf]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ompT+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ompT]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
{{BacktoTop}}
 
Mg(2+) stimulon-PhoPQ regulon, EvgAS-PhoPQ cascade enhanced-expression subset.<ref name='LIB:EcoGene'/>
 




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==References==
==References==
{{BacktoTop}}
<references/>
<references/>
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Latest revision as of 21:47, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

ompT

Gene Synonym(s)

ECK0557, b0565, JW0554[1], JW0554

Product Desc.

outer membrane protein 3b (a), protease VII[2]; outer membrane protease VII (outer membrane protein 3b)[3]

Outer membrane protease VII, DLP12 prophage; OM protein 2b; omptin[4]

Product Synonyms(s)

DLP12 prophage; outer membrane protease VII (outer membrane protein 3b)[1], B0565[2][1], OmpT[2][1], protease VII[2][1], omptin[2][1] , ECK0557, JW0554, b0565

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ompT[2], envY-ompT[2]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


Mg(2+) stimulon-PhoPQ regulon, EvgAS-PhoPQ cascade enhanced-expression subset.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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