yajL:Quickview: Difference between revisions

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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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|-
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!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
||
''yajL''
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|-
!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
||
''ECK0418, b0424, JW5057, thiJ''<ref name='LIB:Riley_2006'/>(incorrect), thiJ''
|-
|-
!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
||
conserved protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
Function unknown, PfpI/HchA protease/chaperone family; not involved in thiamine metabolism<ref name='LIB:EcoGene'/>
|-
|-
!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
||
''conserved protein<ref name='LIB:Riley_2006'/>, B0424<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YajL<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ThiJ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0418, JW5057, thiJ, b0424''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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|-
!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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|-
|-
!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
||
transcription unit(s): [[:Category:Txn_unit:yajL|yajL]]<ref name='LIB:EcoCyc10.6'/>
|-
|-
!align=left {{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
||


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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yajL&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G198]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120002673&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yajL&loc=MG1655%3A442865..442275,W3110%3A442865..442275,DH10B%3A382196..381606,REL606%3A411473..412063,BW2952%3A345034..345624]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=345034&end=345624&gene=yajL&aa=mnmsasalvclapgseeteavttidllvrggikvttasvasdgnlaitcsrgvklladaplvevadgeydvivlpggikgaecfrdstllvetvkqfhrsgrivaaicaapatvlvphdifpignmtgfptlkdkipaeqwldkrvvwdarvklltsqgpgtaidfglkiidllvgrekahevasqlvmaagiynyye]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yajL+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yajL]]&nbsp;&nbsp;
 
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YajL has been mistakenly described as ThiJ, involved in thiamine metabolism. This phenotype is now attributed to the adjacent thiI gene. This error is acknowledged by T. Begley in a personal communication cited in the discussion section of Mueller et al., NAR 26:2606-10 (1998).C56 peptidase family;  DJ-1/PARK7 superfamily.<ref name='LIB:EcoGene'/>
From EcoGene<ref name='LIB:EcoGene'/>:
 
YajL has been mistakenly described as ThiJ, involved in thiamine metabolism. This phenotype is now attributed to the adjacent thiI gene. This error is acknowledged by T. Begley in a personal communication cited in the discussion section of Mueller et al., NAR 26:2606-10 (1998).<ref name='PMID:9592144'/>  C56 peptidase family;  DJ-1/PARK7 superfamily.<ref name='PMID:17257049'/>






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==References==
==References==
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Latest revision as of 21:44, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

yajL

Gene Synonym(s)

ECK0418, b0424, JW5057, thiJ[1](incorrect), thiJ

Product Desc.

conserved protein[2][3]

Function unknown, PfpI/HchA protease/chaperone family; not involved in thiamine metabolism[4]

Product Synonyms(s)

conserved protein[1], B0424[2][1], YajL[2][1], ThiJ[2][1] , ECK0418, JW5057, thiJ, b0424

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yajL[2]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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From EcoGene[4]:

YajL has been mistakenly described as ThiJ, involved in thiamine metabolism. This phenotype is now attributed to the adjacent thiI gene. This error is acknowledged by T. Begley in a personal communication cited in the discussion section of Mueller et al., NAR 26:2606-10 (1998).[5] C56 peptidase family; DJ-1/PARK7 superfamily.[6]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Mueller, EG et al. (1998) Identification of a gene involved in the generation of 4-thiouridine in tRNA. Nucleic Acids Res. 26 2606-10 PubMed
  6. ↑ Wei, Y et al. (2007) Identification of functional subclasses in the DJ-1 superfamily proteins. PLoS Comput. Biol. 3 e10 PubMed
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