ydgH:Quickview: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
imported>Wikientrybot
Adding EcoGene Comments
touch
 
(12 intermediate revisions by 3 users not shown)
Line 17: Line 17:
|}
|}
</noinclude>
</noinclude>
<!--box uid=421aa90e079fa326b6494f812ad13e79.4959.E46a99e5431b68-->
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.4959.O49b02d1276bfc-->
<!--
<!--
******************************************************************************************
******************************************************************************************
Line 24: Line 24:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  
{|   id="O49b02d1276bfc" class=" tableEdit New_Quickview_Table"


|-
|-
!align=left {{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
||
||
[[ydgH:Gene|''ydgH]]'' (synonyms: ''ECK1599, b1604, JW1596'')<ref name='LIB:Riley_2006'/>
''ydgH''
|-
|-
!align=left {{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
||
||
[[ydgH:Gene_Product(s)|YdgH product]]<ref name='LIB:Riley_2006'/>: predicted protein product, B1604 product
''ECK1599, b1604, JW1596''<ref name='LIB:Riley_2006'/>, JW1596''
|-
|-
!align=left {{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
||
||
conserved hypothetical protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
conserved hypothetical protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Predicted periplasmic protein, YhcN family, function unknown; contains 3 tandem YhcN domains<ref name='LIB:EcoGene'/>
|-
|-
!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
||
''predicted protein<ref name='LIB:Riley_2006'/>, B1604<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdgH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1599, JW1596, b1604''
|-
!align=left {{table_heading_style}} |Function from GO
||
<GO_nr />
|-
!align=left {{table_heading_style}} |Knock-Out Phenotype
||
||


|-
|-
!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
||
||
transcription unit(s): [[:Category:Txn_unit:ydgH|ydgH]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ydgH|ydgH]]<ref name='LIB:EcoCyc10.6'/>  
Line 51: Line 60:
||
||


|-
!align=left {{table_heading_style}} |Quick Links
||
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ydgH&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6860]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003449&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ydgH&loc=MG1655%3A1676451..1677395,W3110%3A1680141..1681085,DH10B%3A1767412..1768356,REL606%3A1655622..1656566,BW2952%3A1568510..1569454]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1568510&end=1569454&gene=ydgH&aa=mklkntllasallsamafsvnaateltpeqaaavkpfdrvvvtgrfnaigeavkavsrradkegaasfyvvdtsdfgnsgnwrvvadlykadaekaeetsnrvingvvelpkdqavliepfdtvtvqgfyrsqpevndaitkaakakgaysfyivrqidanqggnqritafiykkdakkrivqspdvipadseagraalaaggeaakkveipgvattaspssevgrffetqsskggrytvtlpdgtkveelnkataammvpfdsikfsgnygnmtevsyqvakraakkgakyyhitrqwqergnnltvsadlyk]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ydgH+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ydgH]]&nbsp;&nbsp;


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.4959.E46a99e5431b68&page=4959&pagename={{FULLPAGENAMEE}}&type=1&template=Quickview_table edit table] ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.4959.O49b02d1276bfc&page=4959&pagename={{FULLPAGENAMEE}}&type=1&template=New_Quickview_Table edit table]</span> ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.4959.E46a99e5431b68-->
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.4959.O49b02d1276bfc--></protect>
{{Quickview_table_help}}
{{Quickview_table_help}}
<protect><!--Quickview_notes--></protect>
<protect><!--Quickview_notes--></protect>
Line 62: Line 75:


The first 22 aa are predicted to be a type I signal peptide.<ref name='LIB:EcoGene'/>
The first 22 aa are predicted to be a type I signal peptide.<ref name='LIB:EcoGene'/>
YdgH is a member of the [[YhcN_Family]] of paralogs.<ref name='PMID:9588799'/>






<noinclude>
<noinclude>
==References==
==References==
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 21:43, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

ydgH

Gene Synonym(s)

ECK1599, b1604, JW1596[1], JW1596

Product Desc.

conserved hypothetical protein[2][3]

Predicted periplasmic protein, YhcN family, function unknown; contains 3 tandem YhcN domains[4]

Product Synonyms(s)

predicted protein[1], B1604[2][1], YdgH[2][1] , ECK1599, JW1596, b1604

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ydgH[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


The first 22 aa are predicted to be a type I signal peptide.[4]

YdgH is a member of the YhcN_Family of paralogs.[5]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Rudd, KE et al. (1998) Low molecular weight proteins: a challenge for post-genomic research. Electrophoresis 19 536-44 PubMed
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=ydgH:Quickview&oldid=1395200"