YhcN Family
There are 8 E. coli K-12 paralogs of YhcN: YkgI, YahO, YbiJ, BhsA (YcfR), YdgH, YjfN, YjfO, and YjfI.[1] YjfO is predicted to be a lipoprotein. The other family members, except for YjfI, are predicted by SignalP to be located in the periplasm.
Pfam includes these 9 E. coli K-12 proteins and 1 other (YbiM) in Pfam family PF07338. The region of each protein that contains DUF1471 (PF07338) is shown in the table below (generated from Pfam vers. 23.0). YdgH has 3 copies of the domain.
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| Gene Name | UniProtKB Accession | AA residues in DUF1471 (PF07338) | AA sequence of DUF1471 (PF17338) |
|---|---|---|---|
|
P64614 |
8-87 |
AALSVLSVLSFGAFAADSIDAAQAQNREAIGTVSVSGVASSPMDMREMLNKKAEEKGATAYQITEARSGDTWHATAELYK | |
|
P76177 |
9-90 |
ASALLSAMAFSVNAATELTPEQAAAVKPFDRVVVTGRFNAIGEAVKAVSRRADKEGAASF YVVDTSDFGNSGNWRVVADLYK | |
|
P76177 |
104-174 |
INGVVELPKDQAVLIEPFDTVTVQGFYRSQPEVNDAITKAAKAKGAYSFYIVRQIDANQG GNQRITAFIYK | |
|
P76177 |
244-314 |
DGTKVEELNKATAAMMVPFDSIKFSGNYGNMTEVSYQVAKRAAKKGAKYYHITRQWQERG NNLTVSADLYK | |
|
P0AF82 |
9-91 |
SLQLVTYPASATAQSAEFASADCVTGLNEIGQISVSNISGDPQDVERIVALKADEQGASWYRIITMYEDQQPDNWRVQAILYA | |
|
bhsA (ycfR) |
P0AB40 |
9-85 |
AAAILSSMSFASFAAVEVQSTPEGQQKVGTISANAGTNLGSLEEQLAQKADEMGAKSFRITSVTGPNTLHGTAVIYK |
|
P75687 |
9-78 |
ATLLSGVMAFSTNADDKIILKHISVSSVSASPTVLEDTIADIARKYNASSWKVTSMRIDNNSTATAVLYK | |
|
P0AAX3 |
9-86 |
AAMALSTLSFGVFAAEPVTASQAQNMNKIGVVSADGASTLDALEAKLAEKAAAAGASGYSITSATNNNKLSGTAVIYK | |
|
bsmA (yjfO) |
P39297 |
21-108 |
MLSACSALQGTPQPAPPVTDHPQEIRRDQTQGLQRIGSVSTMVRGSPDDALAEIKAKAVAAKADYYVVVMVDETIVTGQWYSQAILYR |
|
P75694 |
7-89 |
MLVGALALAVTNVYAAELMTKAEFEKVESQYEKIGDISTSNEMSTADAKEDLIKKADEKGADVLVLTSGQTDNKIHGTANIYK | |
|
P0AF86 |
7-91 |
ALLAVLLLSANTWAAIEINNHQARNMDDVQSLGVIYINHNFATESEARQALNEETDAQGATYYHVILMREPGSNGNMHASADIYR | |
|
mcbA (ybiM) |
P0AAX6 |
56-134 |
LIATVLSGISLTAYAAQPMSNLDSGQLRPAGTVSATGASNLSDLEDKLAEKAREQGAKGYVINSAGGNDQMFGTATIYK |
| edit table |
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References
