lexA:Quickview: Difference between revisions

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{|   id="U49aeeb1258214" class=" tableEdit New_Quickview_Table"


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!align=left {{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[lexA:Gene|''lexA]]'' (synonyms: ''ECK4035, b4043, JW4003, exrA, tsl, umuA'')<ref name='LIB:Riley_2006'/>
''lexA''
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!align=left {{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[lexA:Gene_Product(s)|LexA product]]<ref name='LIB:Riley_2006'/>: DNA-binding transcriptional repressor of SOS regulon product, B4043 product, Tsl product, UmuA product, ExrA product
''ECK4035, b4043, JW4003, exrA, tsl, umuA''<ref name='LIB:Riley_2006'/>, spr, umuA''
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!align=left {{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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LexA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
LexA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:LexA transcriptional repressor|LexA transcriptional repressor]]<ref name='LIB:EcoCyc10.6'/>
Component of [[:Category:Complex:LexA transcriptional repressor|LexA transcriptional repressor]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Global regulator (repressor) for SOS regulon; dimeric<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
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''DNA-binding transcriptional repressor of SOS regulon<ref name='LIB:Riley_2006'/>, B4043<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Tsl<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, UmuA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ExrA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, LexA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK4035, exrA, JW4003, spr, tsl, umuA, b4043''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:lexA-dinF|lexA-dinF]]<ref name='LIB:EcoCyc10.6'/>, OP00046, lexA  
transcription unit(s): [[:Category:Txn_unit:lexA-dinF|lexA-dinF]]<ref name='LIB:EcoCyc10.6'/>, OP00046, lexA  
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=lexA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10533]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000526&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=lexA&loc=MG1655%3A4255138..4255746,W3110%3A4260705..4261313,DH10B%3A4354834..4355442,REL606%3A4236047..4236655,BW2952%3A4193983..4194591]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4193983&end=4194591&gene=lexA&aa=mkaltarqqevfdlirdhisqtgmpptraeiaqrlgfrspnaaeehlkalarkgvieivsgasrgirllqeeeeglplvgrvaagepllaqqhieghyqvdpslfkpnadfllrvsgmsmkdigimdgdllavhktqdvrngqvvvariddevtvkrlkkqgnkvellpensefkpivvdlrqqsftieglavgvirngdwl]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=lexA+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=lexA]]&nbsp;&nbsp;


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Latest revision as of 21:48, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

lexA

Gene Synonym(s)

ECK4035, b4043, JW4003, exrA, tsl, umuA[1], spr, umuA

Product Desc.

LexA[2][3];

Component of LexA transcriptional repressor[2][3]

Global regulator (repressor) for SOS regulon; dimeric[4]

Product Synonyms(s)

DNA-binding transcriptional repressor of SOS regulon[1], B4043[2][1], Tsl[2][1], UmuA[2][1], ExrA[2][1], LexA[2][1] , ECK4035, exrA, JW4003, spr, tsl, umuA, b4043

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): lexA-dinF[2], OP00046, lexA

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


LexA autocleavage, stimulated by RecA, of the first 84 aa of LexA removes the DNA binding region and is required to activate the SOS response. LexA recognition site: CTGTATATATATACAG.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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