Cis Element:attL: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
New page: {{subst:Cis_Element}}
 
touch
 
(9 intermediate revisions by 2 users not shown)
Line 1: Line 1:
__NOTOC__
__NOTOC__
==Cis element summary table==
==Cis element summary table==
<newTableEdit>Template:Cis_element_summary_table</newTableEdit>
<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.149479.M4989f36cc82a6-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->
{|  id="M4989f36cc82a6"  class=" tableEdit Cis_element_summary_table" 
 
|-
!align=left {{table_heading_style}} |Standard Name
||
<i>attL</i>
|-
!align=left {{table_heading_style}} |Synonyms
||
 
|-
!align=left {{table_heading_style}} |Function
||
Integration site for P4-like cryptic prophage
|-
!align=left {{table_heading_style}} |Location
||
54.3 minutes in MG1655
|-
!align=left {{table_heading_style}} |SO terms
||
 
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.149479.M4989f36cc82a6&page=149479&pagename={{FULLPAGENAMEE}}&type=1&template=Cis_element_summary_table edit table]</span> ||
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.149479.M4989f36cc82a6--></protect>
===Notes===
===Notes===


== Location and Sequence ==
== Location and Sequence ==
{{BacktoTop}}
{{BacktoTop}}
<newTableEdit>Template:Gene_location_table</newTableEdit>
<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.149479.A4989f36cca51f-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Gene_location_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="A4989f36cca51f"  class=" tableEdit Gene_location_table" 
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
[http://ecoliwiki.net/colipedia/index.php/MG1655 MG1655]
|
54.3 minutes
|
MG1655: 2753957..2753978<br />{{GBrowseFigureByCoord|2753957|2753978|ecoli|MG1655|DNA_unlabeled}}
|
{{GBrowseLink|ecoli|NC_000913|2753957|2753978|GBrowse(MG1655)}}
|
{{GBrowseFastaLink|ecoli|NC_000913|2753957|2753978|FASTA Dump}}
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.149479.A4989f36cca51f&page=149479&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table]</span> || || || ||
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.149479.A4989f36cca51f--></protect>


===Notes===
===Notes===
Line 12: Line 70:
== Interactions==
== Interactions==
{{BacktoTop}}
{{BacktoTop}}
<newTableEdit>Template:Product_interactions_table</newTableEdit>
<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.149479.P4989f36ccb865-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Product_interactions_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="P4989f36ccb865"  class=" tableEdit Product_interactions_table dataTable" 
|- {{table heading style}}
!|Partner Type!!Partner!!Notes!!References!!Evidence
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.149479.P4989f36ccb865&page=149479&pagename={{FULLPAGENAMEE}}&type=0&template=Product_interactions_table edit table]</span> || || || ||
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.149479.P4989f36ccb865--></protect>


===Notes===
===Notes===
Line 18: Line 90:
== Mutant alleles and phenotypes ==
== Mutant alleles and phenotypes ==
{{BacktoTop}}
{{BacktoTop}}
<newTableEdit>Template:Cis_Element_allele_table</newTableEdit>
<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.149479.R4989f36cccb62-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="R4989f36cccb62"  class=" tableEdit Cis_Element_allele_table" 
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.149479.R4989f36cccb62&page=149479&pagename={{FULLPAGENAMEE}}&type=0&template=Cis_Element_allele_table edit table]</span> || || || || || ||
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.149479.R4989f36cccb62--></protect>


===Notes===
===Notes===
Line 24: Line 110:
== Genetic Resources ==
== Genetic Resources ==
{{BacktoTop}}
{{BacktoTop}}
<newTableEdit>Template:Gene resource table </newTableEdit>  
<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.149479.D4989f36ccdd95-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Gene_resources_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="D4989f36ccdd95"  class=" tableEdit Gene_resource_table" 
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.149479.D4989f36ccdd95&page=149479&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_resource_table edit table]</span> || || ||
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.149479.D4989f36ccdd95--></protect>  
===Notes===
===Notes===


== Accessions ==
== Accessions ==
{{BacktoTop}}
{{BacktoTop}}
<newTableEdit>Template:Gene accessions table</newTableEdit>
<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.149479.Q4989f36ccef83-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Gene_accessions_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Q4989f36ccef83"  class=" tableEdit Gene_accessions_table" 
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[http://www.uni-giessen.de/ecoli/ECDC/ecdc.htm ECDC]
|
[http://www.uni-giessen.de/cgi-bin/cgiwrap/gx1052/ecgetrf.pl?CF02538 attL]
|
|-
|
[[EcoCyc]]
|
EcoCyc:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.149479.Q4989f36ccef83&page=149479&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.149479.Q4989f36ccef83--></protect>


===Notes===
===Notes===
Line 36: Line 192:
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />


===Categories===
===Categories===
[[Category:Cis Element]]
[[Category:Cis Element|attL]]

Latest revision as of 07:17, 27 May 2013

Cis element summary table

Standard Name

attL

Synonyms
Function

Integration site for P4-like cryptic prophage

Location

54.3 minutes in MG1655

SO terms


edit table

Notes

Location and Sequence

[back to top]


See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

54.3 minutes

MG1655: 2753957..2753978
gbrowse_img.php?coord=2753957..2753978&genome=ecoli&name=MG1655&trackset=DNA_unlabeled&width=300&.png

edit table


Notes

Interactions

[back to top]


See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
edit table


Notes

Mutant alleles and phenotypes

[back to top]


Allele Nt change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
edit table


Notes

Genetic Resources

[back to top]


See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference
edit table

Notes

Accessions

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

ECDC

attL

EcoCyc

EcoCyc:

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=Cis_Element:attL&oldid=1376970"