prs:Evolution: Difference between revisions

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<noinclude>{{TabsTop}}
<noinclude>{{TabsTop}}
{{Tab|Quickview|prs}}{{Tab|Gene|prs}}{{Tab|Gene Product(s)|prs}}{{Tab|Expression|prs}}{{Tab On|Evolution|prs}}{{Tab|On One Page|prs}}{{TabsBottom}}
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</noinclude>
==Homologs in Other Organisms==
==Homologs in Other Organisms==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Q46abb9e2335af"  class=" tableEdit Evolution_homologs_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
|-
|-  
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''Anopheles gambiae''   
''Anopheles gambiae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Apis mellifera''   
''Apis mellifera''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Bos taurus''   
''Bos taurus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Danio rerio''   
''Danio rerio''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Gallus gallus''   
''Gallus gallus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Homo sapiens''   
''Homo sapiens''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Macaca mulatta''   
''Macaca mulatta''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Monodelphis domestica''   
''Monodelphis domestica''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Mus musculus''   
''Mus musculus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Pan troglodytes''   
''Pan troglodytes''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Rattus norvegicus''   
''Rattus norvegicus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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|-  
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Takifugu rubripes''   
''Takifugu rubripes''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
From SHIGELLACYC  
|-class='sortbottom'
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|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..K46a0757209ec9&page=&pagename={{FULLPAGENAMEE}} edit table] || ||
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''E. coli'' O157
|
PRSA
|
From ECOO157CYC
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.46377.Q46abb9e2335af&page=46377&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table]</span> || ||
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{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_415725&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_415725&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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==Families==
==Families==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="J46abba111f836"  class=" tableEdit Gene_accessions_table" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
|-  
|
|
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00156 PFAM:PF00156]
[http://pfam.janelia.org/family/PF00156 PF00156 Phosphoribosyl transferase domain]
|
|
   
   
|-class='sortbottom'
|-  
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..Z46a07583615ed&page=&pagename={{FULLPAGENAMEE}} edit table] || ||
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53271 SUPERFAMILY:53271]
|
|-
|
[[EcoCyc]]
|
EcoCyc:EG10774
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG10774
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120000765
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB0767
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0004054
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.46377.J46abba111f836&page=46377&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
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{{Evolution_families_table_help}}
 
<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
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==Links==
==Links==
{{Evolution_links_default}}
{{BacktoTop}}
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="D46a805a09b80b"  class=" tableEdit Links_table" 
|- {{table_heading_style}}
!|Name!!URL!!Comments
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.46377.D46a805a09b80b&page=46377&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
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==References==
==References==
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
[[Category:Genes with homologs in Anopheles gambiae ]][[Category:Genes with homologs in Apis mellifera ]][[Category:Genes with homologs in Arabidopsis thaliana ]][[Category:Genes with homologs in Bos taurus ]][[Category:Genes with homologs in Caenorhabditis briggsae ]][[Category:Genes with homologs in Caenorhabditis elegans ]][[Category:Genes with homologs in Canis familiaris ]][[Category:Genes with homologs in Ciona intestinalis ]][[Category:Genes with homologs in Danio rerio ]][[Category:Genes with homologs in Dictyostelium discoideum ]][[Category:Genes with homologs in Drosophila melanogaster ]][[Category:Genes with homologs in Drosophila pseudoobscura ]][[Category:Genes with homologs in Gallus gallus ]][[Category:Genes with homologs in Homo sapiens ]][[Category:Genes with homologs in Macaca mulatta ]][[Category:Genes with homologs in Monodelphis domestica ]][[Category:Genes with homologs in Mus musculus ]][[Category:Genes with homologs in Oryza gramene ]][[Category:Genes with homologs in Pan troglodytes ]][[Category:Genes with homologs in Rattus norvegicus ]][[Category:Genes with homologs in Saccharomyces cerevisiae ]][[Category:Genes with homologs in Schizosaccharomyces pombe ]][[Category:Genes with homologs in Takifugu rubripes ]][[Category:Genes with homologs in Tetraodon nigroviridis ]][[Category:Genes with homologs in Xenopus tropicalis ]][[Category:Genes with homologs in Shigella flexneri ]][[Category:Genes with homologs in E. coli O157]]</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Genes with homologs in Anopheles gambiae ]]
[[Category:Genes with homologs in Apis mellifera ]]
[[Category:Genes with homologs in Arabidopsis thaliana ]]
[[Category:Genes with homologs in Bos taurus ]]
[[Category:Genes with homologs in Caenorhabditis briggsae ]]
[[Category:Genes with homologs in Caenorhabditis elegans ]]
[[Category:Genes with homologs in Canis familiaris ]]
[[Category:Genes with homologs in Ciona intestinalis ]]
[[Category:Genes with homologs in Danio rerio ]]
[[Category:Genes with homologs in Dictyostelium discoideum ]]
[[Category:Genes with homologs in Drosophila melanogaster ]]
[[Category:Genes with homologs in Drosophila pseudoobscura ]]
[[Category:Genes with homologs in Gallus gallus ]]
[[Category:Genes with homologs in Homo sapiens ]]
[[Category:Genes with homologs in Macaca mulatta ]]
[[Category:Genes with homologs in Monodelphis domestica ]]
[[Category:Genes with homologs in Mus musculus ]]
[[Category:Genes with homologs in Oryza gramene ]]
[[Category:Genes with homologs in Pan troglodytes ]]
[[Category:Genes with homologs in Rattus norvegicus ]]
[[Category:Genes with homologs in Saccharomyces cerevisiae ]]
[[Category:Genes with homologs in Schizosaccharomyces pombe ]]
[[Category:Genes with homologs in Takifugu rubripes ]]
[[Category:Genes with homologs in Tetraodon nigroviridis ]]
[[Category:Genes with homologs in Xenopus tropicalis ]]
[[Category:Genes with homologs in Shigella flexneri ]]
[[Category:Genes with homologs in E. coli O157]]

Latest revision as of 08:32, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000013157 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000021459 (score: 1.000; bootstrap: 88%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G32380 (score: 1.000; bootstrap: 100%)
  • AT2G35390 (score: 0.816)
  • AT2G44530 (score: 0.562)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000011618 (score: 1.000; bootstrap: 99%)
  • ENSBTAP00000026261 (score: 0.979)
  • ENSBTAP00000027722 (score: 0.906)
  • ENSBTAP00000033743 (score: 0.821)
  • ENSBTAP00000010164 (score: 0.241)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00036510 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00020107 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000026564 (score: 1.000; bootstrap: 99%)
  • ENSCAFP00000017185 (score: 0.861)
  • ENSCAFP00000011623 (score: 0.781)
  • ENSCAFP00000003608 (score: 0.550)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000004419 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Danio rerio

  • ZDB-CDNA-040425-3890 (score: 1.000; bootstrap: 99%)
  • ZDB-CDNA-050706-10 (score: 0.985)
  • ZDB-GENE-011212-5 (score: 0.985)
  • ZDB-CDNA-040425-3575 (score: 0.830)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0186131 (score: 1.000; bootstrap: 100%)
  • DDB0168827 (score: 0.302)
  • DDB0185586 (score: 0.240)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0036030 (score: 1.000; bootstrap: 100%)
  • FBgn0039790 (score: 0.050)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA19849-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000007837 (score: 1.000; bootstrap: 99%)
  • ENSGALP00000029645 (score: 0.741)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000276174 (score: 1.000; bootstrap: 99%)
  • ENSP00000218027 (score: 1.000; bootstrap: 99%)
  • ENSP00000283289 (score: 0.888)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000012758 (score: 1.000; bootstrap: 99%)
  • ENSMMUP00000014891 (score: 0.578)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000021634 (score: 1.000; bootstrap: 99%)
  • ENSMODP00000017636 (score: 0.928)
  • ENSMODP00000026315 (score: 0.734)

From Inparanoid:20070104

Mus musculus

  • MGI:97775 (score: 1.000; bootstrap: 99%)
  • MGI:97776 (score: 0.929)
  • MGI:1922706 (score: 0.923)
  • MGI:2144955 (score: 0.610)

From Inparanoid:20070104

Oryza gramene

  • Q6Z2L5 (score: 1.000; bootstrap: 100%)
  • Q69XQ6 (score: 0.398)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000038121 (score: 1.000; bootstrap: 99%)
  • ENSPTRP00000032388 (score: 0.899)
  • ENSPTRP00000037123 (score: 0.716)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000043734 (score: 1.000; bootstrap: 99%)
  • ENSRNOP00000005615 (score: 1.000; bootstrap: 99%)
  • ENSRNOP00000040723 (score: 0.982)
  • ENSRNOP00000048319 (score: 0.926)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YHL011C (score: 1.000; bootstrap: 100%)
  • YER099C (score: 0.390)
  • YBL068W (score: 0.362)
  • YOL061W (score: 0.083)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPCC16206c (score: 1.000; bootstrap: 100%)
  • SPAC4A84 (score: 0.083)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000129872 (score: 1.000; bootstrap: 98%)
  • NEWSINFRUP00000132009 (score: 0.728)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00015834001 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000011720 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Shigella flexneri

PRSA

From SHIGELLACYC

E. coli O157

PRSA

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00156 Phosphoribosyl transferase domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:53271

EcoCyc

EcoCyc:EG10774

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10774

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000765

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0767

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004054

Escherichia coli str. K-12 substr. MG1655

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