nuoC:Quickview: Difference between revisions

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{|   id="B49aeee8addf60" class=" tableEdit New_Quickview_Table"


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!align=left {{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[nuoC:Gene|''nuoC]]'' (synonyms: ''ECK2280, b2286, JW5375, nuoCD, nuoD'')<ref name='LIB:Riley_2006'/>
''nuoC''
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!align=left {{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[nuoC:Gene_Product(s)|NuoC product]]<ref name='LIB:Riley_2006'/>: NADH:ubiquinone oxidoreductase, chain C,D product, B2286 product, NuoD product, NuoCD product
''ECK2280, b2286, JW5375, nuoCD, nuoD''<ref name='LIB:Riley_2006'/>, nuoD''
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!align=left {{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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NuoC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
NuoC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:connecting fragment of NADH dehydrogenase I|connecting fragment of NADH dehydrogenase I]]<ref name='LIB:EcoCyc11.1'/>,[[:Category:Complex:NADH dehydrogenase I|NADH dehydrogenase I]]<ref name='LIB:EcoCyc10.6'/>
Component of [[:Category:Complex:connecting fragment of NADH dehydrogenase I|connecting fragment of NADH dehydrogenase I]]<ref name='LIB:EcoCyc11.1'/>; [[:Category:Complex:NADH dehydrogenase I|NADH dehydrogenase I]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


NADH:ubiquinone oxidoreductase subunit C, complex I; NADH dehydrogenase I<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
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''NADH:ubiquinone oxidoreductase, chain C,D<ref name='LIB:Riley_2006'/>, B2286<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NuoD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NuoCD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NuoC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2280, JW5375, nuoCD, nuoD, b2286''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:nuoABCEFGHIJKLMN|nuoABCEFGHIJKLMN]]<ref name='LIB:EcoCyc10.6'/>, nuo1-14  
transcription unit(s): [[:Category:Txn_unit:nuoABCEFGHIJKLMN|nuoABCEFGHIJKLMN]]<ref name='LIB:EcoCyc10.6'/>, nuo1-14  
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=nuoC&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12084]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001990&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=nuoC&loc=MG1655%3A2401879..2400077,W3110%3A2408527..2406725,REL606%3A2347448..2345646,DH10B%3A2493644..2491842,BW2952%3A2285882..2287672]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2285882&end=2287672&gene=nuoC&aa=mvnnmtdltaqepawqtrdhlddpvigelrnrfgpdaftvqatrtgvpvvwikreqllevgdflkklpkpyvmlfdlhgmderlrthreglpaadfsvfyhlisidrnrdimlkvalaendlhvptftklfpnanwyeretwdlfgitfdghpnlrrimmpqtwkghplrkdyparatefspfeltkakqdlemealtfkpeewgmkrgtenedfmflnlgpnhpsahgafrivlqldgeeivdcvpdigyhhrgaekmgerqswhsyipytdrieylggcvnempyvlaveklagitvpdrvnvirvmlselfrinshllyistfiqdvgamtpvffaftdrqkiydlveaitgfrmhpawfriggvahdlprgwdrllrefldwmpkrlasyekaalqntilkgrsqgvaaygakealewgttgaglratgidfdvrkarpysgyenfdfeipvgggvsdcytrvmlkveelrqslrileqclnnmpegpfkadhplttpppkertlqhietlithflqvswgpvmpanesfqmieatkginsyyltsdgstmsyrtrvrtpsfahlqqipaairgslvsdlivylgsidfvmsdvdr]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=nuoC+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=nuoC]]&nbsp;&nbsp;


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<protect><!--Quickview_notes--></protect>
<protect><!--Quickview_notes--></protect>
===Notes===
===Notes===
{{BacktoTop}}
{{BacktoTop}}
Leif (1995) find the starting amino acids at codon +4 (MVNN), in conflict with the more recent data of David (2002), which does not include these 4 amino acids and the initial Met. Alignment with Yersinia NuoC supports the second ATG annotated here. The reason for the discrepancy is not known as both used native protein preparations, although the protein band sequenced by Leif et al. was not the correct MW for the revised, fused NuoCD protein sequence. HT_Cmplx18_Mem: NuoB+NuoC.<ref name='LIB:EcoGene'/>




Latest revision as of 21:47, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

nuoC

Gene Synonym(s)

ECK2280, b2286, JW5375, nuoCD, nuoD[1], nuoD

Product Desc.

NuoC[2][3];

Component of connecting fragment of NADH dehydrogenase I[3]; NADH dehydrogenase I[2][3]

NADH:ubiquinone oxidoreductase subunit C, complex I; NADH dehydrogenase I[4]

Product Synonyms(s)

NADH:ubiquinone oxidoreductase, chain C,D[1], B2286[2][1], NuoD[2][1], NuoCD[2][1], NuoC[2][1] , ECK2280, JW5375, nuoCD, nuoD, b2286

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): nuoABCEFGHIJKLMN[2], nuo1-14

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


Leif (1995) find the starting amino acids at codon +4 (MVNN), in conflict with the more recent data of David (2002), which does not include these 4 amino acids and the initial Met. Alignment with Yersinia NuoC supports the second ATG annotated here. The reason for the discrepancy is not known as both used native protein preparations, although the protein band sequenced by Leif et al. was not the correct MW for the revised, fused NuoCD protein sequence. HT_Cmplx18_Mem: NuoB+NuoC.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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