kdsA:Quickview: Difference between revisions

Latest revision as of 21:48, 27 May 2013

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Quickview

Gene

Standard Name	kdsA
Gene Synonym(s)	ECK1203, b1215, JW1206^[1], JW1206
Product Desc.	KdsA^[2]; 3-deoxy-D-manno-octulosonate 8-phosphate synthase^[3]; Component of [[:Category:Complex:3-deoxy-D-manno-octulosonic acid 8-phosphate synthase\|3-deoxy-D-manno-octulosonic acid 8-phosphate synthase]]^[2]; [[:Category:Complex:3-deoxy-D-manno-octulosonic acid 8-phosphate synthase\|3-deoxy-D-manno-octulosonate 8-phosphate synthase]]^[3] 3-deoxy-D-manno-octulosonate 8-phosphate (KDO8-P) synthase; LPS biosynthesis^[4]
Product Synonyms(s)	3-deoxy-D-manno-octulosonate 8-phosphate synthase^[1], B1215^[2]^[1], KdsA^[2]^[1] , ECK1203, JW1206, b1215
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): kdsA^[2], ychQA-kdsA^[2]
Regulation/Activity
Quick Links
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Notes

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kdsA gutQ double mutants are non-viable and lack KDO; multicopy msbA, or unknown chromsomal mutation(s) in suppressed KDO-null strain KPM22, permit viabilty without KDO-containing LPS (Meredith, 2006).^[4]

References

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↑ ^1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

[LIB:Riley_2006-1] 1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)

[LIB:EcoCyc10.6-2] 2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoCyc11.1-3] 3.0 ^3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoGene-4] 4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

[1]

[2]

[3]

[4]

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 <noinclude>{{TabsTop}}
 {{Tab On|Quickview|kdsA}}{{Tab|Gene|kdsA}}{{Tab|Gene Product(s)|kdsA}}{{Tab|Expression|kdsA}}{{Tab|Evolution|kdsA}}{{Tab|On One Page|kdsA}}{{TabsBottom}}
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+{|   id="W49aeeaa78a79c"  class=" tableEdit New_Quickview_Table"
 |-
-!{{table_heading_style}} |Gene Name
+!align=left {{table_heading_style}} |Standard Name
-|
+||
-[[kdsA:Gene|''kdsA]]'' (synonyms: ''ECK1203, b1215, JW1206'')<ref name='LIB:Riley_2006'/>
+''kdsA''
 |-
-!{{table_heading_style}} |Product(s)
+!align=left {{table_heading_style}} |Gene Synonym(s)
-|
+||
-[[kdsA:Gene_Product(s)|KdsA product]]<ref name='LIB:Riley_2006'/>: 3-deoxy-D-manno-octulosonate 8-phosphate synthase<ref name='LIB:Riley_2006'/>, B1215<ref name='LIB:EcoCyc10.6'/>, KdsA<ref name='LIB:EcoCyc10.6'/>, [[:Category:Complex:3-deoxy-D-<i>manno</i>-octulosonic acid 8-phosphate synthase|3-deoxy-D-<i>manno</i>-octulosonic acid 8-phosphate synthase]]<ref name='LIB:EcoCyc10.6'/>
+''ECK1203, b1215, JW1206''<ref name='LIB:Riley_2006'/>, JW1206''
 |-
-!{{table_heading_style}} |Description
+!align=left {{table_heading_style}} |Product Desc.
-|
+||
-KdsA<ref name='LIB:EcoCyc10.6'/>3-deoxy-D-<i>manno</i>-octulosonate 8-phosphate synthase<ref name='LIB:EcoCyc11.1'/>
+KdsA<ref name='LIB:EcoCyc10.6'/>; 3-deoxy-D-<i>manno</i>-octulosonate 8-phosphate synthase<ref name='LIB:EcoCyc11.1'/>;
+Component of [[:Category:Complex:3-deoxy-D-<i>manno</i>-octulosonic acid 8-phosphate synthase|3-deoxy-D-<i>manno</i>-octulosonic acid 8-phosphate synthase]]<ref name='LIB:EcoCyc10.6'/>; [[:Category:Complex:3-deoxy-D-<i>manno</i>-octulosonic acid 8-phosphate synthase|3-deoxy-D-<i>manno</i>-octulosonate 8-phosphate synthase]]<ref name='LIB:EcoCyc11.1'/>
+-deoxy-D-manno-octulosonate 8-phosphate (KDO8-P) synthase; LPS biosynthesis<ref name='LIB:EcoGene'/>
+|-
+!align=left {{table_heading_style}} |Product Synonyms(s)
+||
+''3-deoxy-D-manno-octulosonate 8-phosphate synthase<ref name='LIB:Riley_2006'/>, B1215<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, KdsA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1203, JW1206, b1215''
+|-
+!align=left {{table_heading_style}} |Function from GO
+||
+<GO_nr />
 |-
-!{{table_heading_style}} |Knock-Out Phenotype
+!align=left {{table_heading_style}} |Knock-Out Phenotype
-|
+||
 |-
-!{{table_heading_style}} |Regulation/Expression
+!align=left {{table_heading_style}} |Regulation/Expression
-|
+||
-transcription unit(s): [[:Category:txn_units:kdsA|kdsA]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:txn_units:ychQA-kdsA|ychQA-kdsA]]<ref name='LIB:EcoCyc10.6'/>
+transcription unit(s): [[:Category:Txn_unit:kdsA|kdsA]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:ychQA-kdsA|ychQA-kdsA]]<ref name='LIB:EcoCyc10.6'/>
 |-
-!{{table_heading_style}} |Regulation/Activity
+!align=left {{table_heading_style}} |Regulation/Activity
-|
+||
 |-
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+!align=left {{table_heading_style}} |Quick Links
+||
+[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=kdsA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10518]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000511&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=kdsA&loc=MG1655%3A1267388..1268242,W3110%3A1269742..1270596,DH10B%3A1307629..1308483,REL606%3A1268315..1269169,BW2952%3A1156109..1156963]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1156109&end=1156963&gene=kdsA&aa=mkqkvvsigdinvandlpfvlfggmnvlesrdlamricehyvtvtqklgipyvfkasfdkanrssihsyrgpgleegmkifqelkqtfgvkiitdvhepsqaqpvadvvdviqlpaflarqtdlveamaktgavinvkkpqfvspgqmgnivdkfkeggnekvilcdrganfgydnlvvdmlgfsimkkvsgnspvifdvthalqcrdpfgaasggrraqvaelaragmavglaglfieahpdpehakcdgpsalplaklepflkqmkaiddlvkgfeeldtsk]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=kdsA+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=kdsA]]&nbsp;&nbsp;
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 <protect><!--Quickview_notes--></protect>
-==Notes==
+===Notes===
+{{BacktoTop}}
+kdsA gutQ double mutants are non-viable and lack KDO; multicopy msbA, or unknown chromsomal mutation(s) in suppressed KDO-null strain KPM22, permit viabilty without KDO-containing LPS (Meredith, 2006).<ref name='LIB:EcoGene'/>
 <noinclude>
 ==References==
+{{BacktoTop}}
 <references/>
 </noinclude>

kdsA:Quickview: Difference between revisions

Latest revision as of 21:48, 27 May 2013

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