dadX:Quickview: Difference between revisions

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{{Tab On|Quickview|dadX}}{{Tab|Gene|dadX}}{{Tab|Gene Product(s)|dadX}}{{Tab|Expression|dadX}}{{Tab|Evolution|dadX}}{{Tab|On One Page|dadX}}{{TabsBottom}}
{{Tab On|Quickview|dadX}}{{Tab|Gene|dadX}}{{Tab|Gene Product(s)|dadX}}{{Tab|Expression|dadX}}{{Tab|Evolution|dadX}}{{Tab|On One Page|dadX}}{{TabsBottom}}
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|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[dadX:Gene|''dadX]]'' (synonyms: ''ECK1178, b1190, JW1179, alnA, alnB, dadB, msuA?'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''dadX''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[dadX:Gene_Product(s)|DadX product]]<ref name='LIB:Riley_2006'/>: alanine racemase 2, PLP-binding<ref name='LIB:Riley_2006'/>, B1190<ref name='LIB:EcoCyc10.6'/>, DadB<ref name='LIB:EcoCyc10.6'/>, AlnB<ref name='LIB:EcoCyc10.6'/>, AlnA<ref name='LIB:EcoCyc10.6'/>, DadX<ref name='LIB:EcoCyc10.6'/>, alanine racemase<ref name='LIB:EcoCyc10.6'/>, [[:Category:Complex:alanine racemase 2, PLP-binding|alanine racemase 2, PLP-binding]]<ref name='LIB:EcoCyc11.1'/>
''ECK1178, b1190, JW1179, alnA, alnB, dadB, msuA?''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, msuA?''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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ALARACECAT-MONOMER<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
ALARACECAT<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:alanine racemase 2, PLP-binding|alanine racemase 2, PLP-binding]]<ref name='LIB:EcoCyc11.1'/>


Alanine racemase; homodimeric<ref name='LIB:EcoGene'/>
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
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''alanine racemase 2, PLP-binding<ref name='LIB:Riley_2006'/>, B1190<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DadB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AlnB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AlnA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DadX<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, alanine racemase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , alnB, dadB, ECK1178, JW1179, msuA?, b1190''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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ΔdadX fails to grow on L-alanine as sole carbon source. No D-alanine auxotrophy except in the double ΔalrΔdadX mutant. Either Alr or DadX supplies sufficient D-alanine for cell wall biosynthesis.
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:dadAX|dadAX]]<ref name='LIB:EcoCyc10.6'/>, dad
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Activity
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transcription unit(s): [[:Category:txn_units:dadAX|dadAX]]<ref name='LIB:EcoCyc10.6'/>, dad
Induced by L-alanine. Converts L- to D-alanine for catabolism.
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=dadX&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11408]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001374&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=dadX&loc=MG1655%3A1238102..1239172,W3110%3A1240456..1241526,DH10B%3A1278343..1279413,REL606%3A1239029..1240099,BW2952%3A1126823..1127893]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1126823&end=1127893&gene=dadX&aa=mtrpiqasldlqalkqnlsivrqaatharvwsvvkanayghgieriwsaigatdgfallnleeaitlrergwkgpilmlegffhaqdleiydqhrlttcvhsnwqlkalqnarlkapldiylkvnsgmnrlgfqpdrvltvwqqlramanvgemtlmshfaeaehpdgisgamarieqaaeglecrrslsnsaatlwhpeahfdwvrpgiilygaspsgqwrdiantglrpvmtlsseiigvqtlkagervgyggrytardeqrigivaagyadgyprhaptgtpvlvdgvrtmtvgtvsmdmlavdltpcpqagigtpvelwgkeikiddvaaaagtvgyelmcalalrvpvvtv]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=dadX+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=dadX]]&nbsp;&nbsp;


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==Notes==
===Notes===
{{BacktoTop}}
 
 
 




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==References==
==References==
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Latest revision as of 21:51, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

dadX

Gene Synonym(s)

ECK1178, b1190, JW1179, alnA, alnB, dadB, msuA?[1][2], msuA?

Product Desc.

ALARACECAT[2][3];

Component of alanine racemase 2, PLP-binding[3]

Alanine racemase; homodimeric[4]

Product Synonyms(s)

alanine racemase 2, PLP-binding[1], B1190[2][1], DadB[2][1], AlnB[2][1], AlnA[2][1], DadX[2][1], alanine racemase[2][1] , alnB, dadB, ECK1178, JW1179, msuA?, b1190

Function from GO

<GO_nr />

Knock-Out Phenotype

ΔdadX fails to grow on L-alanine as sole carbon source. No D-alanine auxotrophy except in the double ΔalrΔdadX mutant. Either Alr or DadX supplies sufficient D-alanine for cell wall biosynthesis.

Regulation/Expression

transcription unit(s): dadAX[2], dad

Regulation/Activity

Induced by L-alanine. Converts L- to D-alanine for catabolism.

Quick Links



        

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Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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