fpr:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
From SHIGELLACYC  
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
From ECOO157CYC  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00175 PF00175  Oxidoreductase NAD-binding domain ]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00970 PF00970  Oxidoreductase FAD-binding domain]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52343 SUPERFAMILY:52343]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00970 PFAM:PF00970]
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19384:SF51 PTHR19384:SF51]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=63380 SUPERFAMILY:63380]
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[[EcoCyc]]
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EcoCyc:EG10628
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10628
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000621
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1480
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0012818
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
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{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
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===Categories===
===Categories===
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Latest revision as of 08:37, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Oryza gramene

  • Q5VR12 (score: 1.000; bootstrap: 100%)
  • Q9ZPN0 (score: 0.298)
  • Q5N760 (score: 0.298)
  • Q8W2K4 (score: 0.280)
  • Q6AVN1 (score: 0.280)
  • Q6ZC37 (score: 0.197)
  • Q6ZC33 (score: 0.197)
  • P16081 (score: 0.197)
  • P27967 (score: 0.187)
  • Q6ZHH7 (score: 0.185)
  • P27968 (score: 0.181)
  • P27969 (score: 0.181)
  • Q9XGW5 (score: 0.181)
  • P17571 (score: 0.181)
  • P49102 (score: 0.176)
  • Q43265 (score: 0.169)
  • P39871 (score: 0.113)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000021892 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

FPR

From SHIGELLACYC

E. coli O157

FPR

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00175 Oxidoreductase NAD-binding domain

Pfam (EcoliWiki Page)

PF00970 Oxidoreductase FAD-binding domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:52343

Panther (EcoliWiki Page)

PTHR19384:SF51

Superfamily (EcoliWiki Page)

SUPERFAMILY:63380

EcoCyc

EcoCyc:EG10628

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10628

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000621

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1480

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012818

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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