atpC:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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From Inparanoid:20070104  
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''Oryza gramene''   
''Oryza gramene''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF02823 PF02823  ATP synthase, Delta/Epsilon chain, beta-sandwich domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00401 PF00401  ATP synthase, Delta/Epsilon chain, long alpha-helix domain]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=46604 SUPERFAMILY:46604]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF02823 PFAM:PF02823]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=51344 SUPERFAMILY:51344]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13822:SF2 PTHR13822:SF2]
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[[EcoCyc]]
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EcoCyc:EG10100
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10100
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000096
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0098
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0012206
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
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{{RefHelp}}
{{RefHelp}}
<references/>
<references />
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__NOTOC__
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===Categories===
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Latest revision as of 08:37, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000018565 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000024322 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00025661 (score: 1.000; bootstrap: 100%)
  • WBGene00025660 (score: 0.460)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00019061 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0028342 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • P69444 (score: 1.000; bootstrap: 100%)
  • P69446 (score: 1.000; bootstrap: 100%)
  • P69445 (score: 1.000; bootstrap: 100%)
  • P69443 (score: 1.000; bootstrap: 100%)
  • Q6L393 (score: 0.981)
  • Q6ENV7 (score: 0.981)
  • P00835 (score: 0.981)
  • Q6QY69 (score: 0.968)
  • Q6QY05 (score: 0.968)
  • P12086 (score: 0.968)
  • Q6ENG8 (score: 0.968)
  • Q8S6F4 (score: 0.963)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC13E74 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000002474 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

ATPC

From SHIGELLACYC

E. coli O157

ATPC

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain

Pfam (EcoliWiki Page)

PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:46604

Superfamily (EcoliWiki Page)

SUPERFAMILY:51344

Panther (EcoliWiki Page)

PTHR13822:SF2

EcoCyc

EcoCyc:EG10100

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10100

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000096

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0098

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012206

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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