topA:Evolution: Difference between revisions

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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="D46abbbaf54d69"  class=" tableEdit Evolution_homologs_table" 
|- {{table heading style}}
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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From Inparanoid:20070104  
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
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''Bos taurus''   
''Bos taurus''   
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From Inparanoid:20070104  
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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From Inparanoid:20070104  
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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From Inparanoid:20070104  
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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From Inparanoid:20070104  
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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''E. coli'' O157  
''E. coli'' O157  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11390:SF17 PTHR11390:SF17]
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|-
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=56712 SUPERFAMILY:56712]
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|-
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=57783 SUPERFAMILY:57783]
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|-
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=57783 SUPERFAMILY:57783]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01751 PFAM:PF01751]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=57783 SUPERFAMILY:57783]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=57783 SUPERFAMILY:57783]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF01131 PF01131  DNA topoisomerase]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF01751 PF01751  Toprim domain]
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|-
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF01396 PF01396  Topoisomerase DNA binding C4 zinc finger]
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|-
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF01396 PF01396  Topoisomerase DNA binding C4 zinc finger]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF08272 PF08272  Topoisomerase I zinc-ribbon-like ]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF08272 PF08272  Topoisomerase I zinc-ribbon-like ]
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[[EcoCyc]]
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EcoCyc:EG11013
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11013
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[RegulonDB]]
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RegulonDB:ECK120001002
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[EchoBASE]]
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EchoBASE:EB1006
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[ASAP]]
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ASAP:ABE-0004275
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
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{{RefHelp}}
{{RefHelp}}
<references/>
<references />
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===Categories===
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Latest revision as of 08:32, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000027829 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000017117 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G31210 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000022721 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000022999 (score: 0.134)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00034105 (score: 1.000; bootstrap: 100%)
  • WBGene00039708 (score: 0.144)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00006596 (score: 1.000; bootstrap: 100%)
  • WBGene00012995 (score: 0.141)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000026983 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000022795 (score: 0.136)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000016196 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000000598 (score: 0.151)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0217608 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0040268 (score: 1.000; bootstrap: 100%)
  • FBgn0026015 (score: 0.095)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA10090-PA (score: 1.000; bootstrap: 100%)
  • GA17464-PA (score: 0.100)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000008036 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000002248 (score: 0.116)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000215840 (score: 1.000; bootstrap: 100%)
  • ENSP00000353166 (score: 0.155)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000019022 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000017797 (score: 0.121)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000017120 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000022073 (score: 0.131)

From Inparanoid:20070104

Mus musculus

  • MGI:1197527 (score: 1.000; bootstrap: 100%)
  • MGI:1333803 (score: 0.135)

From Inparanoid:20070104

Oryza gramene

  • Q5VMY4 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000024315 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000046426 (score: 0.154)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000002524 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000006848 (score: 0.129)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YLR234W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC16G52c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000156273 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000136008 (score: 0.120)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00011897001 (score: 1.000; bootstrap: 100%)
  • GSTENP00001410001 (score: 0.184)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000040195 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000012696 (score: 0.147)

From Inparanoid:20070104

Shigella flexneri

TOPA

From SHIGELLACYC

E. coli O157

TOPA

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Panther (EcoliWiki Page)

PTHR11390:SF17

Superfamily (EcoliWiki Page)

SUPERFAMILY:56712

Superfamily (EcoliWiki Page)

SUPERFAMILY:57783

Superfamily (EcoliWiki Page)

SUPERFAMILY:57783

Superfamily (EcoliWiki Page)

SUPERFAMILY:57783

Superfamily (EcoliWiki Page)

SUPERFAMILY:57783

Pfam (EcoliWiki Page)

PF01131 DNA topoisomerase

Pfam (EcoliWiki Page)

PF01751 Toprim domain

Pfam (EcoliWiki Page)

PF01396 Topoisomerase DNA binding C4 zinc finger

Pfam (EcoliWiki Page)

PF01396 Topoisomerase DNA binding C4 zinc finger

Pfam (EcoliWiki Page)

PF08272 Topoisomerase I zinc-ribbon-like

Pfam (EcoliWiki Page)

PF08272 Topoisomerase I zinc-ribbon-like

EcoCyc

EcoCyc:EG11013

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11013

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001002

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1006

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004275

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

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References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

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