tolA:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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From Inparanoid:20070104  
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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From Inparanoid:20070104  
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''Monodelphis domestica''   
''Monodelphis domestica''   
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From Inparanoid:20070104  
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''Mus musculus''   
''Mus musculus''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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From Inparanoid:20070104  
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
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''E. coli'' O157  
''E. coli'' O157  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23242:SF3 PTHR23242:SF3]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=74653 SUPERFAMILY:74653]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF06519 PFAM:PF06519]
[http://pfam.janelia.org/family/PF06519 PF06519 TolA C-terminal]
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[[EcoCyc]]
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EcoCyc:EG11007
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11007
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000996
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1000
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0002515
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
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{{RefHelp}}
{{RefHelp}}
<references/>
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===Categories===
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Latest revision as of 08:31, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000012554 (score: 1.000; bootstrap: 66%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000005636 (score: 1.000; bootstrap: 66%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G12780 (score: 1.000; bootstrap: 62%)
  • AT4G12770 (score: 0.819)
  • AT1G75310 (score: 0.188)
  • AT1G21660 (score: 0.172)
  • AT4G36520 (score: 0.156)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00030862 (score: 1.000; bootstrap: 88%)
  • WBGene00030863 (score: 0.443)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00006436 (score: 1.000; bootstrap: 84%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000004064 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0232250 (score: 1.000; bootstrap: 95%)
  • DDB0216653 (score: 0.074)
  • DDB0232136 (score: 0.056)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA22048-PA (score: 1.000; bootstrap: 61%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000013000 (score: 1.000; bootstrap: 75%)
  • ENSMODP00000023350 (score: 0.153)

From Inparanoid:20070104

Mus musculus

  • MGI:97309 (score: 1.000; bootstrap: 63%)
  • MGI:97314 (score: 0.182)
  • MGI:96568 (score: 0.130)
  • MGI:97313 (score: 0.111)
  • MGI:98932 (score: 0.105)
  • MGI:94885 (score: 0.097)
  • MGI:97774 (score: 0.091)
  • MGI:95697 (score: 0.089)
  • MGI:96705 (score: 0.058)
  • MGI:3045312 (score: 0.051)
  • MGI:96704 (score: 0.051)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC17C93 (score: 1.000; bootstrap: 94%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00028759001 (score: 1.000; bootstrap: 68%)
  • GSTENP00030688001 (score: 0.178)
  • GSTENP00010435001 (score: 0.143)
  • GSTENP00028290001 (score: 0.129)
  • GSTENP00038963001 (score: 0.111)
  • GSTENP00023158001 (score: 0.085)

From Inparanoid:20070104

Shigella flexneri

TOLA

From SHIGELLACYC

E. coli O157

TOLA

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Panther (EcoliWiki Page)

PTHR23242:SF3

Superfamily (EcoliWiki Page)

SUPERFAMILY:74653

Pfam (EcoliWiki Page)

PF06519 TolA C-terminal

EcoCyc

EcoCyc:EG11007

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11007

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000996

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1000

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002515

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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