xdhD:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Bos taurus''   
''Bos taurus''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
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''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''E. coli'' O157  
''E. coli'' O157  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF02738 PF02738  Molybdopterin-binding domain of aldehyde dehydrogenase]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF01315 PF01315  Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF01799 PF01799  [2Fe-2S] binding domain]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=47741 SUPERFAMILY:47741]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=54292 SUPERFAMILY:54292]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01315 PFAM:PF01315]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=54665 SUPERFAMILY:54665]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=56003 SUPERFAMILY:56003]
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[[EcoCyc]]
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EcoCyc:G7500
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG13064
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120004063
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB2876
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0009459
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
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===Categories===
===Categories===
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Latest revision as of 08:35, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000025172 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000020593 (score: 0.150)
  • ENSANGP00000007280 (score: 0.121)
  • ENSANGP00000021704 (score: 0.119)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000009446 (score: 1.000; bootstrap: 100%)
  • ENSAPMP00000023744 (score: 0.145)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G34890 (score: 1.000; bootstrap: 100%)
  • AT3G43600 (score: 1.000; bootstrap: 100%)
  • AT4G34900 (score: 0.927)
  • AT5G20960 (score: 0.635)
  • AT2G27150 (score: 0.587)
  • AT1G04580 (score: 0.581)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000012827 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000016620 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000038143 (score: 0.562)
  • ENSBTAP00000038141 (score: 0.156)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00040345 (score: 1.000; bootstrap: 100%)
  • WBGene00038477 (score: 0.196)
  • WBGene00038476 (score: 0.137)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00010083 (score: 1.000; bootstrap: 100%)
  • WBGene00015057 (score: 0.182)
  • WBGene00017487 (score: 0.170)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000008465 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000017364 (score: 0.428)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000018788 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000012385 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000000654 (score: 0.135)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0230176 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0003308 (score: 1.000; bootstrap: 100%)
  • FBgn0038347 (score: 0.139)
  • FBgn0038349 (score: 0.128)
  • FBgn0038350 (score: 0.125)
  • FBgn0038348 (score: 0.121)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA20500-PA (score: 1.000; bootstrap: 100%)
  • GA14972-PA (score: 0.135)
  • GA19318-PA (score: 0.120)
  • GA14970-PA (score: 0.117)
  • GA14971-PA (score: 0.114)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000014144 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000013312 (score: 0.494)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000289041 (score: 1.000; bootstrap: 100%)
  • ENSP00000260930 (score: 0.444)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000000757 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000028881 (score: 0.459)
  • ENSMMUP00000007691 (score: 0.343)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000019349 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000015626 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000015675 (score: 0.597)
  • ENSMODP00000018747 (score: 0.586)
  • ENSMODP00000015728 (score: 0.532)

From Inparanoid:20070104

Mus musculus

  • MGI:98973 (score: 1.000; bootstrap: 100%)
  • MGI:3529596 (score: 1.000; bootstrap: 100%)
  • MGI:1918974 (score: 0.645)
  • MGI:1919122 (score: 0.625)
  • MGI:88035 (score: 0.594)

From Inparanoid:20070104

Oryza gramene

  • Q6AUV1 (score: 1.000; bootstrap: 100%)
  • O23887 (score: 0.137)
  • Q8W2P4 (score: 0.136)
  • Q7XH05 (score: 0.136)
  • O23888 (score: 0.134)
  • Q852M1 (score: 0.130)
  • Q852M2 (score: 0.126)
  • Q6Z351 (score: 0.123)
  • Q8LHR9 (score: 0.119)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000020275 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000021853 (score: 0.446)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000009634 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000042328 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000049807 (score: 0.594)
  • ENSRNOP00000021389 (score: 0.557)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000173814 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000180992 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00031889001 (score: 1.000; bootstrap: 100%)
  • GSTENP00012569001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

E. coli O157

Z4220

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase

Pfam (EcoliWiki Page)

PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain

Pfam (EcoliWiki Page)

PF01799 [2Fe-2S binding domain]

Superfamily (EcoliWiki Page)

SUPERFAMILY:47741

Superfamily (EcoliWiki Page)

SUPERFAMILY:54292

Superfamily (EcoliWiki Page)

SUPERFAMILY:54665

Superfamily (EcoliWiki Page)

SUPERFAMILY:56003

EcoCyc

EcoCyc:G7500

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13064

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004063

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2876

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009459

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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