suhB:Evolution: Difference between revisions

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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="F46abe05c170b4"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Bos taurus''   
''Bos taurus''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
''Canis familiaris''   
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Danio rerio''   
''Danio rerio''   
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00459 PF00459  Inositol monophosphatase family]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20854:SF10 PTHR20854:SF10]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00459 PFAM:PF00459]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=56655 SUPERFAMILY:56655]
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[[EcoCyc]]
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EcoCyc:EG10983
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10983
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000972
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0976
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0008337
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===
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==References==
==References==
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{{RefHelp}}
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===Categories===
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Latest revision as of 08:34, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000023742 (score: 1.000; bootstrap: 99%)
  • ENSANGP00000011437 (score: 0.052)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000025568 (score: 1.000; bootstrap: 94%)
  • ENSAPMP00000005924 (score: 0.136)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G02870 (score: 1.000; bootstrap: 61%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000015548 (score: 1.000; bootstrap: 99%)
  • ENSBTAP00000025956 (score: 0.320)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00040566 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00008765 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000012482 (score: 1.000; bootstrap: 99%)
  • ENSCAFP00000027751 (score: 0.414)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000002314 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040718-245 (score: 1.000; bootstrap: 99%)
  • ZDB-CDNA-040718-273 (score: 1.000; bootstrap: 99%)
  • ZDB-CDNA-050522-349 (score: 0.399)
  • ZDB-GENE-050522-349 (score: 0.399)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0204100 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0037063 (score: 1.000; bootstrap: 100%)
  • FBgn0037064 (score: 0.209)
  • FBgn0036551 (score: 0.098)
  • FBgn0036552 (score: 0.081)
  • FBgn0036553 (score: 0.055)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA21751-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000025398 (score: 1.000; bootstrap: 99%)
  • ENSGALP00000022380 (score: 0.473)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000256108 (score: 1.000; bootstrap: 99%)
  • ENSP00000269159 (score: 0.437)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000003532 (score: 1.000; bootstrap: 99%)
  • ENSMMUP00000013725 (score: 0.403)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000007775 (score: 1.000; bootstrap: 99%)
  • ENSMODP00000026772 (score: 0.368)

From Inparanoid:20070104

Mus musculus

  • MGI:2149728 (score: 1.000; bootstrap: 100%)
  • MGI:1933158 (score: 0.422)

From Inparanoid:20070104

Oryza gramene

  • Q6F2U7 (score: 1.000; bootstrap: 65%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000016801 (score: 1.000; bootstrap: 99%)
  • ENSPTRP00000034860 (score: 0.278)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000025147 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000014274 (score: 0.418)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YDR287W (score: 1.000; bootstrap: 100%)
  • YHR046C (score: 0.410)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000144417 (score: 1.000; bootstrap: 98%)
  • NEWSINFRUP00000144419 (score: 0.529)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00004507001 (score: 1.000; bootstrap: 100%)
  • GSTENP00025538001 (score: 0.525)
  • GSTENP00025537001 (score: 0.503)
  • GSTENP00004506001 (score: 0.146)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000002482 (score: 1.000; bootstrap: 53%)

From Inparanoid:20070104

Shigella flexneri

SUHB

From SHIGELLACYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00459 Inositol monophosphatase family

Panther (EcoliWiki Page)

PTHR20854:SF10

Superfamily (EcoliWiki Page)

SUPERFAMILY:56655

EcoCyc

EcoCyc:EG10983

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10983

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000972

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0976

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008337

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

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References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

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