rplE:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Bos taurus''   
''Bos taurus''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
''Canis familiaris''   
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Danio rerio''   
''Danio rerio''   
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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''E. coli'' O157  
''E. coli'' O157  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="H46abfbb385428"  class=" tableEdit Gene_accessions_table" 
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11994:SF4 PTHR11994:SF4]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=55282 SUPERFAMILY:55282]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00281 PFAM:PF00281]
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00281 PF00281 Ribosomal protein L5]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00673 PF00673  ribosomal L5P family C-terminus]
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[[EcoCyc]]
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EcoCyc:EG10868
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10868
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000859
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0861
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0010833
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
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{{RefHelp}}
<references/>
<references />
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===Categories===
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Latest revision as of 08:36, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000028292 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000014188 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G01310 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000027850 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000033099 (score: 0.399)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00034687 (score: 1.000; bootstrap: 100%)
  • WBGene00024572 (score: 0.914)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00004423 (score: 1.000; bootstrap: 100%)
  • WBGene00004422 (score: 0.917)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000019499 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000018057 (score: 0.762)
  • ENSCAFP00000001168 (score: 0.749)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000006828 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040625-147 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040625-213 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0214853 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0013325 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000006295 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000270799 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000016049 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1914275 (score: 1.000; bootstrap: 100%)
  • MGI:3644073 (score: 0.940)
  • MGI:3644404 (score: 0.917)

From Inparanoid:20070104

Oryza gramene

  • Q9ZST0 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000032903 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000005511 (score: 0.521)
  • ENSRNOP00000034448 (score: 0.459)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YDR237W (score: 1.000; bootstrap: 92%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC2F122c (score: 1.000; bootstrap: 82%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000164953 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00003639001 (score: 1.000; bootstrap: 100%)
  • GSTENP00005881001 (score: 0.436)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000002557 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

RPLE

From SHIGELLACYC

E. coli O157

RPLE

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Panther (EcoliWiki Page)

PTHR11994:SF4

Superfamily (EcoliWiki Page)

SUPERFAMILY:55282

Pfam (EcoliWiki Page)

PF00281 Ribosomal protein L5

Pfam (EcoliWiki Page)

PF00673 ribosomal L5P family C-terminus

EcoCyc

EcoCyc:EG10868

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10868

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000859

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0861

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010833

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

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