smpB:Gene Product(s): Difference between revisions

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|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Gene Product Resources|Resources]]
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{|{{Prettytable}}
{|  id="B46aab3a1d0708"  class=" tableEdit Product_nomenclature_table" 
 
|-
|-
!{{table heading style}} |Standard name
!align=left {{table heading style}} |Standard name
|
||
SmpB product
SmpB  
|-
|-
!{{table heading style}} |Synonyms
!align=left {{table heading style}} |Synonyms
|
||
trans-translation protein product<ref name='LIB:Riley_2006'/>, B2620 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SmqB product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SmpB product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''trans-translation protein<ref name='LIB:Riley_2006'/>, B2620<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SmqB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SmpB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2616, JW2601, smqB, b2620''
|-
|-
!{{table heading style}} |Product description
!align=left {{table heading style}} |Product description
|
||
small protein B<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
small protein B<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


tmRNA RNA-binding protein; required for peptide-tagging trans-translation and association of tmRNA(SsrA) with ribosomes<ref name='LIB:EcoGene'/>
|-
|-
!{{table heading style}} |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
|
||
*
 
|-
 
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<protect><!--Nomenclature_notes--></protect>
<protect><!--Nomenclature_notes--></protect>
===Notes===
===Notes===
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{{BacktoTop}}
{{BacktoTop}}
<protect>
<protect>
<big>'''Gene Ontology'''</big>
<big>'''Gene Ontology'''</big><br /><!--box uid=421aa90e079fa326b6494f812ad13e79.25538.G46aab3a2e07b0-->
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****************************************************************************************** -->{{Product_GO_help}}
{|class = 'sortable' {{Prettytable}} id='170694'
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="G46aab3a2e07b0"  class=" tableEdit GO_table_product dataTable" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|-
|
 
|
GO:0003723
|
RNA binding
|
GOA:hamap<br />GO_REF:0000020
|
IEA: Inferred from Electronic Annotation
|
HAMAP:MF_00023
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|
 
|
GO:0003723
|
RNA binding
|
GOA:interpro<br />GO_REF:0000002
|
IEA: Inferred from Electronic Annotation
|
InterPro:IPR000037
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|
 
|
GO:0003723
|
RNA binding
|
GOA:spkw<br />SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0694
|
F
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|
 
|
GO:0005737
|
cytoplasm
|
GOA:hamap<br />GO_REF:0000020
|
IEA: Inferred from Electronic Annotation
|
HAMAP:MF_00023
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-
|
 
|
GO:0005737
|
cytoplasm
|
GOA:spkw<br />SP_KW:GO_REF:0000004
|
IEA: Inferred from Electronic Annotation
|
SP_KW:KW-0963
|
C
|
Seeded from [[EcoCyc]] (v14.0)
|
complete
|-  
|
|
 
|
|
GO:0006464
GO:0005737
|
|
protein modification process
cytoplasm
|
|
GO_REF:0000023
|
|
IEA: Inferred from Electronic Annotation
|
|
SP_SL:SL-0086
|
|
P
C
|
|
Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.  
Seeded from [[EcoCyc]] (v14.0)
|
|
required fields missing 
complete
|-
|-  
|
|
 
|
|
GO:0006515
GO:0006412
|
|
misfolded or incompletely synthesized protein catabolic process
translation
|
|
GOA:interpro<br />GO_REF:0000002
|
|
IEA: Inferred from Electronic Annotation
|
|
InterPro:IPR000037
|
|
P  
P
|
|
Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.  
Seeded from [[EcoCyc]] (v14.0)
|
|
required fields missing 
complete
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<span id="Interactions"></span><big>'''Interactions'''</big>
<span id="Interactions"></span><big>'''Interactions'''</big>
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|- {{table heading style}}
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!Partner Type!!Partner!!Notes
!|Partner Type!!Partner!!Notes!!References!!Evidence
|-
|-
|
Protein
|
aidB<br />
|
 
|
PMID:15690043
|
Experiment(s):EBI-882920<br />
|-
|
Protein
|
clpA<br />
|
 
|
PMID:15690043
|
Experiment(s):EBI-882920<br />
|-
|
Protein
|
infB<br />
|
 
|
PMID:15690043
|
Experiment(s):EBI-882920<br />
|-
|
Protein
|
malP<br />
|
 
|
PMID:15690043
|
Experiment(s):EBI-882920<br />
|-
|
Protein
|
parC<br />
|
 
|
PMID:15690043
|
Experiment(s):EBI-882920<br />
|-
|
Protein
|
rplF<br />
|
 
|
PMID:15690043
|
Experiment(s):EBI-882920, EBI-890426<br />
|-
|
Protein
|
rpsA<br />
|
 
|
PMID:15690043
|
Experiment(s):EBI-882920, EBI-890426<br />
|-
|
Protein
|
rpsB<br />
|
 
|
PMID:15690043
|
Experiment(s):EBI-882920, EBI-890426<br />
|-
|
Protein
|
rpsC<br />
|
 
|
PMID:15690043
|
Experiment(s):EBI-882920<br />
|-
|
Protein
|
secA<br />
|
 
|
PMID:15690043
|
Experiment(s):EBI-882920<br />
|-
|
Protein
|
selB<br />
|
 
|
PMID:15690043
|
Experiment(s):EBI-882920<br />
|-
|
Protein
|
ycbB<br />
|
 
|
PMID:15690043
|
Experiment(s):EBI-882920<br />
|-
|
Protein
|
yfiF<br />
|
 
|
PMID:15690043
|
Experiment(s):EBI-882920<br />
|-
|
Protein
|
gyrA<br />
|
 
|
PMID:15690043
|
Experiment(s):EBI-890426<br />
|-
|
Protein
|
gyrB<br />
|
 
|
PMID:15690043
|
Experiment(s):EBI-890426<br />
|-
|
Protein
|
skp<br />
|
 
|
PMID:15690043
|
Experiment(s):EBI-890426<br />
|-
|
Protein
|
hupA<br />
|
 
|
PMID:15690043
|
Experiment(s):EBI-890426<br />
|-
|
Protein
|
hupB<br />
|
 
|
PMID:15690043
|
Experiment(s):EBI-890426<br />
|-
|
Protein
|
rplM<br />
|
 
|
PMID:15690043
|
Experiment(s):EBI-890426<br />
|-
|
Protein
|
rplX<br />
|
 
|
PMID:15690043
|
Experiment(s):EBI-890426<br />
|-
|
Protein
|
rpmB<br />
|
 
|
PMID:15690043
|
Experiment(s):EBI-890426<br />
|-
|
Protein
|
rpsE<br />
|
 
|
PMID:15690043
|
Experiment(s):EBI-890426<br />
|-
|
Protein
|
rpsN<br />
|
 
|
PMID:15690043
|
Experiment(s):EBI-890426<br />
|-
|
Protein
|
yeeX<br />
|
 
|
PMID:15690043
|
Experiment(s):EBI-890426<br />
|-
|
Protein
|
vsr<br />
|
 
|
PMID:16606699
|
Experiment(s):EBI-1143521<br />
|-
|
Protein
|
yibK<br />
|
 
|
PMID:16606699
|
Experiment(s):EBI-1143521<br />
|-
|
Protein
|
rplA<br />
|
 
|
PMID:16606699
|
Experiment(s):EBI-1143521<br />
|-
|
Protein
|
ycgE<br />
|
 
|
PMID:16606699
|
Experiment(s):EBI-1143521<br />
|-
|
Protein
|
ycfJ<br />
|
 
|
PMID:16606699
|
Experiment(s):EBI-1143521<br />
|-
|
Protein
|
secA
|
 
|
PMID:19402753
|
MALDI(Z-score):18.851547
|-
|
Protein
|
aidB
|
 
|
PMID:19402753
|
LCMS(ID Probability):98.3 MALDI(Z-score):27.388524
|-
|
Protein
|
rplF
|
 
|
PMID:19402753
|
LCMS(ID Probability):99.6 MALDI(Z-score):35.816231
|-
|
Protein
|
skp
|
 
|
PMID:19402753
|
LCMS(ID Probability):99.6
|-
|
Protein
|
rpsA
|
 
|
PMID:19402753
|
LCMS(ID Probability):99.6 MALDI(Z-score):26.098127
|-
|
Protein
|
gyrA
|
 
|
PMID:19402753
|
LCMS(ID Probability):99.6
|-
|
Protein
|
parC
|
 
|
PMID:19402753
|
MALDI(Z-score):37.105392
|-
|
Protein
|
malP
|
 
|
PMID:19402753
|
MALDI(Z-score):28.886498
|-
|
Protein
|
clpA
|
 
|
PMID:19402753
|
MALDI(Z-score):25.712309
|-
|
Protein
|
hupB
|
 
|
PMID:19402753
|
LCMS(ID Probability):99.6
|-
|
Protein
|
rpsN
|
 
|
PMID:19402753
|
LCMS(ID Probability):99.6
|-
|
Protein
|
rpmB
|
 
|
PMID:19402753
|
LCMS(ID Probability):99.6
|-
|
Protein
|
gyrB
|
 
|
PMID:19402753
|
LCMS(ID Probability):99.6
|-
|
Protein
|
hupA
|
 
|
PMID:19402753
|
LCMS(ID Probability):99.6
|-
|
Protein
|
yfiF
|
 
|
PMID:19402753
|
MALDI(Z-score):36.128347
|-
|
Protein
|
rplM
|
 
|
PMID:19402753
|
LCMS(ID Probability):99.6
|-
|
Protein
|
yeeX
|
 
|
PMID:19402753
|
LCMS(ID Probability):99.6
|-
|
Protein
|
ycbB
|
 
|
PMID:19402753
|
MALDI(Z-score):24.925478
|-  
|
|
RNA
RNA
|
|
SsrA RNA
SsrA RNA
|
|
|
|
   
   
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<!--Function_notes--></protect>
<!--Function_notes--></protect>
===Notes===
===Notes===
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|- {{table heading style}}
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!Compartment!!Description!!Evidence!!Notes
!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
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{|{{Prettytable}}
{|   id="G46aab3ab62efa"  class=" tableEdit Product_phys_prop_table" 
 
|-
!align=left {{table heading style}} |Name
||
 
|-
|-
!{{table heading style}} |Sequence
!align=left {{table heading style}} |Sequence
|
||
[http://biocyc.org/ECOLI/sequence-aa?object=EG11782-MONOMER at EcoCyc]  
[http://biocyc.org/ECOLI/sequence-aa?object=EG11782-MONOMER at EcoCyc]  
<pre>MTKKKAHKPG SATIALNKRA RHEYFIEEEF EAGLALQGWE VKSLRAGKAN ISDSYVLLRD
<pre>MTKKKAHKPG SATIALNKRA RHEYFIEEEF EAGLALQGWE VKSLRAGKAN ISDSYVLLRD
Line 187: Line 813:
AWCKVKIGVA KGKKQHDKRS DIKEREWQVD KARIMKNAHR</pre>  
AWCKVKIGVA KGKKQHDKRS DIKEREWQVD KARIMKNAHR</pre>  
|-
|-
!{{table heading style}} |Mol. Wt
!align=left {{table heading style}} |Length
|
||
18.27 kDa (calc) <ref name='LIB:EcoCyc10.6'/>
160
|-
|-
!{{table heading style}} |pI
!align=left {{table heading style}} |Mol. Wt
|
||
18.269 kDa
|-
|-
!{{table heading style}} |Extinction coefficient
!align=left {{table heading style}} |pI
|
||
29450 - 29700 (calc based on 5 Y, 4 W, and 2 C residues)  
10.4 (calculated)
|-
|-
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!align=left {{table heading style}} |Extinction coefficient
||
29,450 - 29,700 (calc based on 5 Y, 4 W, and 2 C residues)
 
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<big>'''Domains/Motifs/Modification Sites'''</big>
 
<!--box uid=421aa90e079fa326b6494f812ad13e79.25538.V46aab3abd226b-->
<span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span><table>
<tr align="left" valign="top">
<td><!--box uid=421aa90e079fa326b6494f812ad13e79.25538.V46aab3abd226b-->
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!Type!!Residues!!Description!!Notes
!|Type!!Residues!!Description!!Notes!!References
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|
Initiator Methionine
|
1
|
Removed
|
[http://www.uniprot.org/uniprot/P0A832#section_features UniProt:P0A832]
|
|-
|
Domain
|
12..80
|
[http://pfam.janelia.org/family/PF01668 PF01668  SmpB protein]
|
 
|
PMID:19920124
 
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{{Product_domains_motifs_help}}
<td>
<!-- motifs column 2-->
<motif_map/>
</td>
</tr>
</table>


<span id="Structure"></span><big>'''Structure'''</big>
<table><tr valign='top'><td>
<span id='Structure'></span><big>'''Structure'''</big><br />
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{|class = 'sortable' {{Prettytable}} id='115807'
{|   id="L46a84b731cc98"  class=" tableEdit Product_structure_table" 
|- {{table heading style}}
 
!Structure Type!!Organism!!Accession!!Residues covered!!Notes
|-
|-class='sortbottom'
!align=left {{table heading style}} |Structures
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.25538.L46a84b731cc98&page=25538&pagename={{FULLPAGENAMEE}} edit table] || || || ||
||
<beststructure>
gene=smpB
taxon=562,83333
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://www.proteinmodelportal.org/query/uniprot/P0A832 Protein Model Portal]
* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P0A832 PSI-PRED (P0A832)]
* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P0A832 Genomes TO Protein (P0A832)] (GTOP)
 
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|}
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{{Product_structure_help}}
 
<!--Structure_notes--></protect>
</td><td></protect>
==== Structure figures ====
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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===Notes===
===Notes===


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===Notes===
===Notes===
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|- {{table_heading_style}}
|- {{table_heading_style}}
!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
|-
|
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/protein/16130539 GI:16130539]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/protein/NP_417110.1 GeneID:947296]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[[ASAP]]
|
ASAP:ABE-0008622
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[http://www.uniprot.org/uniprot/P0A832 UniProtKB/Swiss-Prot:P0A832]
|
Escherichia coli str. K-12 substr. MG1655
|-  
|
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
[[EcoCyc]]
|
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11782-MONOMER EcoCyc:EG11782-MONOMER] 
EcoCyc:EG11782
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|-  
|
|
[http://swissmodel.expasy.org/repository/ SwissModel] ([[SwissModel|EcoliWiki Page]])
[[EcoGene]]
|
|
[http://swissmodel.expasy.org/repository/smr.php?job=2&sptr_ac=P0A832 SwissModel:P0A832] 
EcoGene:EG11782
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|-  
|
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
|
|
[http://www.expasy.ch/cgi-bin/sprot-search-ac?P0A832 UniProt:P0A832]
[http://www.ncbi.nlm.nih.gov/gene?term=947296 GeneID:947296]
|
|
Escherichia coli str. K-12 substr. MG1655
|-
|-  
|
|
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])
[[RegulonDB]]
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01668 PFAM:PF01668] 
RegulonDB:ECK120001716
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|-  
|
|
[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
[[EchoBASE]]
|
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_417110 RefSeq:NP_417110] 
EchoBASE:EB1730
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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===Notes===
===Notes===
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{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}
[[Category:GO:0006464_!_protein modification process]][[Category:GO:0006515_!_misfolded or incompletely synthesized protein catabolic process]]
[[Category:Proteins]]

Latest revision as of 20:53, 17 February 2015

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

SmpB

Synonyms

trans-translation protein[1], B2620[2][1], SmqB[2][1], SmpB[2][1] , ECK2616, JW2601, smqB, b2620

Product description

small protein B[2][3]

tmRNA RNA-binding protein; required for peptide-tagging trans-translation and association of tmRNA(SsrA) with ribosomes[4]

EC number (for enzymes)


edit table


Notes

Function

[back to top]


Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0003723

RNA binding

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00023

F

Seeded from EcoCyc (v14.0)

complete

GO:0003723

RNA binding

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000037

F

Seeded from EcoCyc (v14.0)

complete

GO:0003723

RNA binding

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0694

F

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:hamap
GO_REF:0000020

IEA: Inferred from Electronic Annotation

HAMAP:MF_00023

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GOA:spkw
SP_KW:GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0963

C

Seeded from EcoCyc (v14.0)

complete

GO:0005737

cytoplasm

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0086

C

Seeded from EcoCyc (v14.0)

complete

GO:0006412

translation

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000037

P

Seeded from EcoCyc (v14.0)

complete

edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

aidB

PMID:15690043[5]

Experiment(s):EBI-882920

Protein

clpA

PMID:15690043[5]

Experiment(s):EBI-882920

Protein

infB

PMID:15690043[5]

Experiment(s):EBI-882920

Protein

malP

PMID:15690043[5]

Experiment(s):EBI-882920

Protein

parC

PMID:15690043[5]

Experiment(s):EBI-882920

Protein

rplF

PMID:15690043[5]

Experiment(s):EBI-882920, EBI-890426

Protein

rpsA

PMID:15690043[5]

Experiment(s):EBI-882920, EBI-890426

Protein

rpsB

PMID:15690043[5]

Experiment(s):EBI-882920, EBI-890426

Protein

rpsC

PMID:15690043[5]

Experiment(s):EBI-882920

Protein

secA

PMID:15690043[5]

Experiment(s):EBI-882920

Protein

selB

PMID:15690043[5]

Experiment(s):EBI-882920

Protein

ycbB

PMID:15690043[5]

Experiment(s):EBI-882920

Protein

yfiF

PMID:15690043[5]

Experiment(s):EBI-882920

Protein

gyrA

PMID:15690043[5]

Experiment(s):EBI-890426

Protein

gyrB

PMID:15690043[5]

Experiment(s):EBI-890426

Protein

skp

PMID:15690043[5]

Experiment(s):EBI-890426

Protein

hupA

PMID:15690043[5]

Experiment(s):EBI-890426

Protein

hupB

PMID:15690043[5]

Experiment(s):EBI-890426

Protein

rplM

PMID:15690043[5]

Experiment(s):EBI-890426

Protein

rplX

PMID:15690043[5]

Experiment(s):EBI-890426

Protein

rpmB

PMID:15690043[5]

Experiment(s):EBI-890426

Protein

rpsE

PMID:15690043[5]

Experiment(s):EBI-890426

Protein

rpsN

PMID:15690043[5]

Experiment(s):EBI-890426

Protein

yeeX

PMID:15690043[5]

Experiment(s):EBI-890426

Protein

vsr

PMID:16606699[6]

Experiment(s):EBI-1143521

Protein

yibK

PMID:16606699[6]

Experiment(s):EBI-1143521

Protein

rplA

PMID:16606699[6]

Experiment(s):EBI-1143521

Protein

ycgE

PMID:16606699[6]

Experiment(s):EBI-1143521

Protein

ycfJ

PMID:16606699[6]

Experiment(s):EBI-1143521

Protein

secA

PMID:19402753[7]

MALDI(Z-score):18.851547

Protein

aidB

PMID:19402753[7]

LCMS(ID Probability):98.3 MALDI(Z-score):27.388524

Protein

rplF

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):35.816231

Protein

skp

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rpsA

PMID:19402753[7]

LCMS(ID Probability):99.6 MALDI(Z-score):26.098127

Protein

gyrA

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

parC

PMID:19402753[7]

MALDI(Z-score):37.105392

Protein

malP

PMID:19402753[7]

MALDI(Z-score):28.886498

Protein

clpA

PMID:19402753[7]

MALDI(Z-score):25.712309

Protein

hupB

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rpsN

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

rpmB

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

gyrB

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

hupA

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

yfiF

PMID:19402753[7]

MALDI(Z-score):36.128347

Protein

rplM

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

yeeX

PMID:19402753[7]

LCMS(ID Probability):99.6

Protein

ycbB

PMID:19402753[7]

MALDI(Z-score):24.925478

RNA

SsrA RNA


edit table


Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
edit table


Notes

Structure and Physical Properties

[back to top]


Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MTKKKAHKPG SATIALNKRA RHEYFIEEEF EAGLALQGWE VKSLRAGKAN ISDSYVLLRD
GEAFLFGANI TPMAVASTHV VCDPTRTRKL LLNQRELDSL YGRVNREGYT VVALSLYWKN
AWCKVKIGVA KGKKQHDKRS DIKEREWQVD KARIMKNAHR
Length

160

Mol. Wt

18.269 kDa

pI

10.4 (calculated)

Extinction coefficient

29,450 - 29,700 (calc based on 5 Y, 4 W, and 2 C residues)

edit table


Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Initiator Methionine

1

Removed

UniProt:P0A832

Domain

12..80

PF01668 SmpB protein

PMID:19920124[8]

edit table

<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=smpB taxon=562,83333 </beststructure>

Models

View models at:

edit table

Structure figures

Notes

Gene Product Resources

[back to top]


See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
edit table


Notes

Accessions in Other Databases

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:16130539

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:947296

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008622

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P0A832

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:EG11782

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11782

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:947296

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001716

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1730

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]




References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.00 5.01 5.02 5.03 5.04 5.05 5.06 5.07 5.08 5.09 5.10 5.11 5.12 5.13 5.14 5.15 5.16 5.17 5.18 5.19 5.20 5.21 5.22 5.23 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
  6. ↑ 6.0 6.1 6.2 6.3 6.4 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  7. ↑ 7.00 7.01 7.02 7.03 7.04 7.05 7.06 7.07 7.08 7.09 7.10 7.11 7.12 7.13 7.14 7.15 7.16 7.17 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
  8. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

[back to top]


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