rplB:Evolution: Difference between revisions

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{|class = 'sortable' {{Prettytable}} id='212602'
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="B46abfc364e7f7"  class=" tableEdit Evolution_homologs_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Apis mellifera''   
''Apis mellifera''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Bos taurus''   
''Bos taurus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Danio rerio''   
''Danio rerio''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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From Inparanoid:20070104  
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Pan troglodytes''   
''Pan troglodytes''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
From SHIGELLACYC  
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
From ECOO157CYC  
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|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.50593.B46abfc364e7f7&page=50593&pagename={{FULLPAGENAMEE}} edit table] || ||
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{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417776&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417776&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="C46abfc68653c9"  class=" tableEdit Gene_accessions_table" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
|-
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=50104 SUPERFAMILY:50104]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=50249 SUPERFAMILY:50249]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13691:SF5 PTHR13691:SF5]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00181 PFAM:PF00181]
[http://pfam.janelia.org/family/PF00181 PF00181 Ribosomal Proteins L2, RNA binding domain]
|
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|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.50593.C46abfc68653c9&page=50593&pagename={{FULLPAGENAMEE}} edit table] || ||
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF03947 PF03947  Ribosomal Proteins L2, C-terminal domain]
|
|-
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[[EcoCyc]]
|
EcoCyc:EG10865
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[EcoGene]]
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EcoGene:EG10865
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[RegulonDB]]
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RegulonDB:ECK120000856
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[EchoBASE]]
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EchoBASE:EB0858
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[ASAP]]
|
ASAP:ABE-0010854
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
|- class="tableEdit_footer"
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{{Evolution_families_table_help}}
 
<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
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{{Links_help}}
 


==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
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===Categories===
===Categories===
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Latest revision as of 08:36, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000010416 (score: 1.000; bootstrap: 72%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000021044 (score: 1.000; bootstrap: 82%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G44065 (score: 1.000; bootstrap: 69%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000016951 (score: 1.000; bootstrap: 84%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00028008 (score: 1.000; bootstrap: 84%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00004413 (score: 1.000; bootstrap: 85%)
  • WBGene00007120 (score: 0.611)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000002594 (score: 1.000; bootstrap: 76%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000003238 (score: 1.000; bootstrap: 78%)

From Inparanoid:20070104

Danio rerio

  • ZDB-CDNA-040425-2610 (score: 1.000; bootstrap: 100%)
  • ZDB-GENE-040426-1670 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-2611 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0201605 (score: 1.000; bootstrap: 74%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0024939 (score: 1.000; bootstrap: 81%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA11728-PA (score: 1.000; bootstrap: 75%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000013983 (score: 1.000; bootstrap: 79%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000340552 (score: 1.000; bootstrap: 79%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000003301 (score: 1.000; bootstrap: 94%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000023698 (score: 1.000; bootstrap: 78%)

From Inparanoid:20070104

Mus musculus

  • MGI:1351622 (score: 1.000; bootstrap: 83%)

From Inparanoid:20070104

Oryza gramene

  • P41096 (score: 1.000; bootstrap: 92%)
  • P17788 (score: 1.000; bootstrap: 90%)
  • Q6ENS1 (score: 1.000; bootstrap: 90%)
  • Q6L3B9 (score: 1.000; bootstrap: 90%)
  • P17351 (score: 0.984)
  • Q6EN83 (score: 0.984)
  • Q7XR20 (score: 0.945)
  • P11534 (score: 0.835)
  • Q6YTM4 (score: 0.174)
  • Q6R9C6 (score: 0.133)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000031075 (score: 1.000; bootstrap: 79%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000024380 (score: 1.000; bootstrap: 73%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YEL050C (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPCC16C45 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000147401 (score: 1.000; bootstrap: 89%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00025116001 (score: 1.000; bootstrap: 84%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000033787 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

RPLB

From SHIGELLACYC

E. coli O157

RPLB

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:50104

Superfamily (EcoliWiki Page)

SUPERFAMILY:50249

Panther (EcoliWiki Page)

PTHR13691:SF5

Pfam (EcoliWiki Page)

PF00181 Ribosomal Proteins L2, RNA binding domain

Pfam (EcoliWiki Page)

PF03947 Ribosomal Proteins L2, C-terminal domain

EcoCyc

EcoCyc:EG10865

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10865

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000856

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0858

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010854

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


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