aspC:Evolution: Difference between revisions

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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="D46abb2e0b3aa0"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Apis mellifera''   
''Apis mellifera''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Bos taurus''   
''Bos taurus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Danio rerio''   
''Danio rerio''   
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From Inparanoid:20070104  
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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From Inparanoid:20070104  
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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From Inparanoid:20070104  
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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From Inparanoid:20070104  
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
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''Pan troglodytes''   
''Pan troglodytes''   
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From Inparanoid:20070104  
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
From ECOO157CYC  
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{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_415448&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_415448&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00155 PF00155  Aminotransferase class I and II]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00155 PFAM:PF00155]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53383 SUPERFAMILY:53383]
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[[EcoCyc]]
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EcoCyc:EG10096
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10096
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[RegulonDB]]
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RegulonDB:ECK120000092
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0094
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[ASAP]]
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ASAP:ABE-0003150
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
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Latest revision as of 08:31, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000016571 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000011707 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000030487 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G19550 (score: 1.000; bootstrap: 100%)
  • AT5G11520 (score: 0.734)
  • AT1G62800 (score: 0.656)
  • AT4G31990 (score: 0.206)
  • AT2G30970 (score: 0.141)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000009440 (score: 1.000; bootstrap: 99%)
  • ENSBTAP00000015873 (score: 0.118)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00027571 (score: 1.000; bootstrap: 99%)
  • WBGene00040842 (score: 0.508)
  • WBGene00036252 (score: 0.063)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00016652 (score: 1.000; bootstrap: 99%)
  • WBGene00015778 (score: 0.498)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000012308 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000013922 (score: 0.139)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000007609 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030131-7917 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-1516 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-3650 (score: 0.783)
  • ZDB-GENE-040426-2703 (score: 0.783)
  • ZDB-CDNA-040425-2950 (score: 0.116)
  • ZDB-GENE-040426-2003 (score: 0.116)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0230092 (score: 1.000; bootstrap: 100%)
  • DDB0230093 (score: 0.107)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0001125 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA18050-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000003646 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000012086 (score: 0.156)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000245206 (score: 1.000; bootstrap: 99%)
  • ENSP00000239123 (score: 0.147)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000007886 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000025373 (score: 0.167)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000017818 (score: 1.000; bootstrap: 99%)
  • ENSMODP00000004345 (score: 0.139)

From Inparanoid:20070104

Mus musculus

  • MGI:95792 (score: 1.000; bootstrap: 100%)
  • MGI:95791 (score: 0.133)

From Inparanoid:20070104

Oryza gramene

  • P37833 (score: 1.000; bootstrap: 100%)
  • Q42391 (score: 1.000; bootstrap: 100%)
  • Q5JMF4 (score: 1.000; bootstrap: 100%)
  • Q7F594 (score: 1.000; bootstrap: 100%)
  • Q84V24 (score: 0.236)
  • Q6KAJ2 (score: 0.236)
  • Q42425 (score: 0.225)
  • Q43057 (score: 0.136)
  • Q6EUS6 (score: 0.125)
  • Q43305 (score: 0.125)
  • Q5Z7I8 (score: 0.108)
  • O48599 (score: 0.102)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000013976 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000004968 (score: 0.138)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000015956 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000051464 (score: 0.742)
  • ENSRNOP00000041826 (score: 0.714)
  • ENSRNOP00000022309 (score: 0.132)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YLR027C (score: 1.000; bootstrap: 91%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC7251 (score: 1.000; bootstrap: 100%)
  • SPAC10F63c (score: 0.115)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000130060 (score: 0.146)
  • NEWSINFRUP00000162658 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000128916 (score: 0.131)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00003870001 (score: 1.000; bootstrap: 99%)
  • GSTENP00010691001 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000034675 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

ASPC

From SHIGELLACYC

E. coli O157

ASPC

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00155 Aminotransferase class I and II

Superfamily (EcoliWiki Page)

SUPERFAMILY:53383

EcoCyc

EcoCyc:EG10096

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10096

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000092

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0094

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003150

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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