ssrS:Expression: Difference between revisions

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==Overview==
===Overview===
{{Expression_overview_placeholder}}
{{Expression_overview_placeholder}}
==Cellular Levels==
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===Notes===
==Transcription and Transcriptional Regulation==
==Transcription and Transcriptional Regulation==
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!Transcription unit(s)
!|Transcription unit(s)
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[[:Category:Txn_unit:ssrS|ssrS]]  
[[:Category:Txn_unit:ssrS|ssrS]]  
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<!--Transcription_notes--></protect>
<!--Transcription_notes--></protect>
===Notes===
===Notes===
{{Expression_transcription_placeholder}}
{{Expression_transcription_placeholder}}
This page was viewed during the EcoliWiki Workshop at the 2007 Molecular Genetics of Bacteria and Phages Meeting in Madison, WI.  During the discussion, one of the workshop participants commented that the transcription unit shown for ''ssrS'' is not accurate.


==Translation and Regulation of Translation==
==Translation and Regulation of Translation==
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<protect>{{GBrowseFigureByCoord|3053985|3054025|ecoli|MG1655|Genes_unlabeled+DNA_unlabeled|400|{{Nterm_closeup}} }}
<protect><gbrowseImage>
name=NC_000913:3053985..3054025
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type=Gene+DNA_+Protein
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===Notes===
===Notes===
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<big>'''Expression Studies'''</big>
<big>'''Expression Studies'''</big>
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!Type!!Reference!!Notes
!|Type!!Reference!!Notes
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microarray
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[[geoprofiles:b2911|GEO Profiles:b2911]] ([[Gene_Expression_Omnibus_%28GEO%29|EcoliWiki Page]])
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NCBI GEO profiles for ''ssrS''
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microarray  
microarray
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[http://chase.ou.edu/macro/searchlink.php?bnum=b2911 EcoliGenExpDB:b2911] ([[EcoliGenExpDB|EcoliWiki Page]])  
[http://genexpdb.ou.edu/index.php?query=b2911 GenExpDB:b2911] ([[EcoliGenExpDB|EcoliWiki Page]])  
|
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Summary of data for ssrS from multiple microarray studies   
Summary of data for ssrS from multiple microarray studies   
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<big>'''Expression Resources'''</big>
<big>'''Expression Resources'''</big>
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<protect><!--Expression_experimental_notes--></protect>
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===Notes===
===Notes===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
[[EcoCyc]]
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG30099 EcoCyc:EG30099] 
EcoCyc:EG30099
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
[[EchoBASE]]
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[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB4262 EchoBASE:EB4262] 
EchoBASE:EB4262
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])  
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])  
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[http://chase.ou.edu/macro/searchlink.php?bnum=b2911 EcoliGenExpDB:b2911]
[http://chase.ou.edu/macro/searchlink.php?bnum=b2911 EcoliGenExpDB:b2911]
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[[EcoGene]]
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EcoGene:EG30099
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120002541
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
[[ASAP]]
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[http://ecogene.org/geneinfo.php?eg_id=EG30099 EcoGene:EG30099] 
ASAP:ABE-0009556
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
__NOTOC__
__NOTOC__
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===Categories===
===Categories===
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{{BacktoTop}}
[[Category:Txn_unit:ssrS]]
[[Category:Txn_unit:ssrS]]

Latest revision as of 08:23, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Overview Transcription Translation Turnover Experimental Links References Suggestions

Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

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See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)
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Notes

Transcription and Transcriptional Regulation

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See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

ssrS

edit table
Figure courtesy of RegulonDB


Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

This page was viewed during the EcoliWiki Workshop at the 2007 Molecular Genetics of Bacteria and Phages Meeting in Madison, WI. During the discussion, one of the workshop participants commented that the transcription unit shown for ssrS is not accurate.

Translation and Regulation of Translation

[back to top]


<gbrowseImage> name=NC_000913:3053985..3054025 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.


Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

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Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
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Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b2911 (EcoliWiki Page)

NCBI GEO profiles for ssrS

microarray

GenExpDB:b2911 (EcoliWiki Page)

Summary of data for ssrS from multiple microarray studies

edit table


Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
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<protect>

Notes

Accessions Related to ssrS Expression

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:EG30099

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB4262

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2911

EcoGene

EcoGene:EG30099

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002541

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009556

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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