Phage lambda cI:Gene: Difference between revisions

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|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
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|-
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!{{table_heading_style}} |Standard name
!align=left {{table_heading_style}} |Standard name
|
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''Phage lambda cI''  
''Phage lambda cI''  
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!{{table_heading_style}} |Mnemonic
!align=left {{table_heading_style}} |Mnemonic
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|-
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!{{table_heading_style}} |Synonyms
!align=left {{table_heading_style}} |Synonyms
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''cI, lambdap88''
''cI, lambdap88''
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===Notes===
===Notes===
 
cI is c for clear plaque and Roman numeral I for one of three complementation groups that give clear plaques.


==Location(s) and DNA Sequence==
==Location(s) and DNA Sequence==
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!Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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[[BW2952]]
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NC_012759: 4142828..4143541<br /><gbrowseImage>
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{{GBrowseLink|BW2952|NC_012759|4142828|4143541|GBrowse (BW2952)}}
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{{GBrowseFastaLink|BW2952|NC_012759|4142828|4143541|FASTA Dump}}
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NC_001416
NC_001416
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NC_001416: 37940..37227<br />{{GBrowseFigureByCoord|36227|38940|bacteriophage_lambda|NC_001416}}
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*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/bacteriophage_lambda/?q=NC_001416:36227..38940 GBrowse(bacteriophage_lambda)]
{{GBrowseLink|bacteriophage_lambda|NC_001416|37940|37227|Gbrowse (Bacteriophage lambda)}}
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*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/bacteriophage_lambda/?plugin=FastaDumper&name=NC_001416:37227..37940&plugin_action=Go FASTA Dump]
{{GBrowseFastaLink|bacteriophage_lambda|NC_001416|37940|37227|FASTA Dump}}
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cIam504
cIam504
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cIam14
cIam14
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cIam505
cIam505
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ind1
ind1
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cIam499
cIam499
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cIam212
cIam212
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cIam34
cIam34
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strain ci857s7([25])
strain ci857s7([25])
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cIam282
cIam282
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cIam302
cIam302
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===Notes===
===Notes===


==Genetic Interactions==
{{BacktoTop}}
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===Notes===


==Genetic Resources==
==Genetic Resources==
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{{BacktoTop}}
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{{RefHelp}}
{{RefHelp}}
<references/>
<references />
__NOTOC__
__NOTOC__
</protect></noinclude>
===Categories===
===Categories===
[[Category:Gene List:Phage lambda]]
[[Category:Gene List:Phage lambda]]
[[Category:Gene_List:BW2952]]

Latest revision as of 20:36, 19 September 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

Phage lambda cI

Mnemonic
Synonyms

cI, lambdap88

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Notes

cI is c for clear plaque and Roman numeral I for one of three complementation groups that give clear plaques.

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

BW2952

NC_012759: 4142828..4143541
<gbrowseImage> name=NC_012759:4142828..4143541 source=BW2952 preset=GeneLocation </gbrowseImage>

NC_001416

NC_001416: 37940..37227
<gbrowseImage> name=NC_001416:37227..37940 source=bacteriophage_lambda preset=GeneLocation </gbrowseImage>

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Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

cIam504

g →c on the + strand at bp 37308

 

 

 

 

 

 

cIam14

c →a on the + strand at bp 37287

 

 

 

 

 

 

cIam505

g →a on the + strand at bp 37313

 

 

 

 

 

 

ind1

c →t on the + strand at bp 37589

 

 

 

 

 

 

cIam499

g →c on the + strand at bp 37629

 

 

 

 

 

 

cIam212

a →c on the + strand at bp 37635

 

 

 

 

 

 

cIam34

c →a on the + strand at bp 37680

 

 

 

 

 

 

strain ci857s7([25])

c →t on the + strand at bp 37742

 

 

 

 

 

 

cIam282

g →a on the + strand at bp 37808

 

 

 

 

 

 

cIam302

a →c on the + strand at bp 37872

 

 

 

 

 

 

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Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links

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Name URL Comments
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<protect>

References

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See Help:References for how to manage references in EcoliWiki.


Categories

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