FAMSBASE: Difference between revisions
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{{Pagetop}} | {{Pagetop}} | ||
[[Category:Databases]] | [[Category:Databases]] | ||
{|{{Prettytable}} width='30%' align = | [[Category:Protein Databases]] | ||
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{| {{Prettytable}} width='30%' align="right" id="P4a25925bdc9d7" class=" tableEdit Database_table" | |||
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!align=left {{table heading style}} |Link/URL: | |||
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[http://daisy.nagahama-i-bio.ac.jp/Famsbase/ FAMSBASE] | |||
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!align=left {{table heading style}} |What: | |||
| Protein structure models by homology modeling | || | ||
Protein structure models by homology modeling | |||
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| | !align=left {{table heading style}} |Who: | ||
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*Hideaki Umeyama | |||
**Kitasato University | |||
*Mitiko Go | |||
**Nagahama Institute of Bio-Science and Technology Japan | |||
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| Updates | !align=left {{table heading style}} |Updates: | ||
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<i> Last Updated: May 2005</i> | |||
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| Upcoming events | !align=left {{table heading style}} |Upcoming events: | ||
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| Web Services | !align=left {{table heading style}} |Web Services: | ||
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|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.1676.P4a25925bdc9d7&page=1676&pagename={{FULLPAGENAMEE}}&type=1&template=Database_table edit table]</span> || | |||
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=About {{PAGENAME}}= | =About {{PAGENAME}}= | ||
=Content= | =Content= | ||
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FAMSBASE requires a login for full access, but an anonymous public login says that it allows searching for ORFs with 3D models. | FAMSBASE requires a login for full access, but an anonymous public login says that it allows searching for ORFs with 3D models. | ||
==Browsing== | ==Browsing== | ||
Following the public login link, many queries take you to a page that asks you to create an account. However, without creating an account, you can view a list of Proteins with FAMSBASE models. This can be restricted to a particular genome by clicking a checkbox for the desired genome. The output gives psiblast scores and links to other FAMSBASE analysis pages (which need a login) and to [[GTOP]]. The ones I tested did not link properly to [[GTOP]]. | |||
==Searching== | ==Searching== | ||
==Usage examples== | ==Usage examples== | ||
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=References= | =References= | ||
<references/> | {{BacktoTop}} | ||
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=External Links= | =External Links= | ||
[http://daisy.nagahama-i-bio.ac.jp/Famsbase/ {{PAGENAME}}] URL: http://daisy.nagahama-i-bio.ac.jp/Famsbase/ | [http://daisy.nagahama-i-bio.ac.jp/Famsbase/ {{PAGENAME}}] URL: http://daisy.nagahama-i-bio.ac.jp/Famsbase/ | ||
==Discussion of {{PAGENAME}} on other websites== | ==Discussion of {{PAGENAME}} on other websites== | ||
Latest revision as of 00:11, 23 May 2010
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| Link/URL: | |
|---|---|
| What: |
Protein structure models by homology modeling |
| Who: |
|
| Updates: |
Last Updated: May 2005 |
| Upcoming events: | |
| Web Services: |
|
| edit table |
About FAMSBASE
Content
FAMSBASE[1] provides automated homology modeling of protein structures.
Using FAMSBASE
FAMSBASE requires a login for full access, but an anonymous public login says that it allows searching for ORFs with 3D models.
Browsing
Following the public login link, many queries take you to a page that asks you to create an account. However, without creating an account, you can view a list of Proteins with FAMSBASE models. This can be restricted to a particular genome by clicking a checkbox for the desired genome. The output gives psiblast scores and links to other FAMSBASE analysis pages (which need a login) and to GTOP. The ones I tested did not link properly to GTOP.
Searching
Usage examples
Add links to additional pages describing success stories here.
Technology
Web Services/API
Discussion
References
See Help:References for how to manage references in EcoliWiki.
External Links
FAMSBASE URL: http://daisy.nagahama-i-bio.ac.jp/Famsbase/