bsmA:Quickview: Difference between revisions

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{{Tab On|Quickview|yjfO}}{{Tab|Gene|yjfO}}{{Tab|Gene Product(s)|yjfO}}{{Tab|Expression|yjfO}}{{Tab|Evolution|yjfO}}{{Tab|On One Page|yjfO}}{{TabsBottom}}
{{Tab On|Quickview|bsmA}}{{Tab|Gene|bsmA}}{{Tab|Gene Product(s)|bsmA}}{{Tab|Expression|bsmA}}{{Tab|Evolution|bsmA}}{{Tab|On One Page|bsmA}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[yjfO:Gene|''yjfO]]'' (synonyms: ''ECK4185, b4189, JW5743'')<ref name='LIB:Riley_2006'/>
''bsmA''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[yjfO:Gene_Product(s)|YjfO product]]<ref name='LIB:Riley_2006'/>: conserved protein product, B4189 product
''ECK4185, b4189, JW5743'', yjfO<ref name='LIB:Riley_2006'/>, JW5743, yjfO''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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conserved protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
conserved protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Function unknown lipoprotein, YhcN family, function unknown; Cys conserved<ref name='LIB:EcoGene'/>
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
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''conserved protein<ref name='LIB:Riley_2006'/>, B4189<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, BsmA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK4185, JW5743, yjfO, b4189''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:yjfO|yjfO]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:bsmA|bsmA]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yjfO&s=search]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yjfO&loc=MG1655%3A4414793..4414464,W3110%3A4421450..4421121,DH10B%3A4515155..4514826,REL606%3A4394925..4394596,BW2952%3A4353199..4353528]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4353199&end=4353528&gene=yjfO&aa=mvsrkrnsviyrfaslllvlmlsacsalqgtpqpappvtdhpqeirrdqtqglqrigsvstmvrgspddalaeikakavaakadyyvvvmvdetivtgqwysqailyrk]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yjfO+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yjfO]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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First 24 aa are a predicted type II signal peptide. YjfO is the only one of ten YhcN paralogs that is predicted to have a type II signal peptide; the others have type I signals predicted or verified.<ref name='LIB:EcoGene'/>
BsmA (YjfO) is a member of the [[YhcN_Family]] of paralogs.<ref name='PMID:9588799'/>




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==References==
==References==
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Latest revision as of 21:40, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

bsmA

Gene Synonym(s)

ECK4185, b4189, JW5743, yjfO[1], JW5743, yjfO

Product Desc.

conserved protein[2][3]

Function unknown lipoprotein, YhcN family, function unknown; Cys conserved[4]

Product Synonyms(s)

conserved protein[1], B4189[2][1], BsmA[2][1] , ECK4185, JW5743, yjfO, b4189

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): bsmA[2]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


First 24 aa are a predicted type II signal peptide. YjfO is the only one of ten YhcN paralogs that is predicted to have a type II signal peptide; the others have type I signals predicted or verified.[4]

BsmA (YjfO) is a member of the YhcN_Family of paralogs.[5]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Rudd, KE et al. (1998) Low molecular weight proteins: a challenge for post-genomic research. Electrophoresis 19 536-44 PubMed
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