sbcC:Evolution: Difference between revisions

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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="U46aba051627e1"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Danio rerio''   
''Danio rerio''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Gallus gallus''   
''Gallus gallus''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
From SHIGELLACYC  
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''E. coli'' O157
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SBCC
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From ECOO157CYC
 
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_414931&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_414931&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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|- {{table_heading_style}}
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF02463 PFAM:PF02463]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52540 SUPERFAMILY:52540]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18937:SF1 PTHR18937:SF1]
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[[EcoCyc]]
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EcoCyc:EG10927
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10927
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000916
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0920
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0001381
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
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{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
[[Category:Genes with homologs in Anopheles gambiae ]][[Category:Genes with homologs in Arabidopsis thaliana ]][[Category:Genes with homologs in Caenorhabditis briggsae ]][[Category:Genes with homologs in Caenorhabditis elegans ]][[Category:Genes with homologs in Ciona intestinalis ]][[Category:Genes with homologs in Danio rerio ]][[Category:Genes with homologs in Drosophila melanogaster ]][[Category:Genes with homologs in Gallus gallus ]][[Category:Genes with homologs in Mus musculus ]][[Category:Genes with homologs in Oryza gramene ]][[Category:Genes with homologs in Pan troglodytes ]][[Category:Genes with homologs in Rattus norvegicus ]][[Category:Genes with homologs in Saccharomyces cerevisiae ]][[Category:Genes with homologs in Schizosaccharomyces pombe ]][[Category:Genes with homologs in Takifugu rubripes ]][[Category:Genes with homologs in Xenopus tropicalis ]][[Category:Genes with homologs in Shigella flexneri ]][[Category:Genes with homologs in E. coli O157]]</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Genes with homologs in Anopheles gambiae ]]
[[Category:Genes with homologs in Arabidopsis thaliana ]]
[[Category:Genes with homologs in Caenorhabditis briggsae ]]
[[Category:Genes with homologs in Caenorhabditis elegans ]]
[[Category:Genes with homologs in Ciona intestinalis ]]
[[Category:Genes with homologs in Danio rerio ]]
[[Category:Genes with homologs in Drosophila melanogaster ]]
[[Category:Genes with homologs in Gallus gallus ]]
[[Category:Genes with homologs in Mus musculus ]]
[[Category:Genes with homologs in Oryza gramene ]]
[[Category:Genes with homologs in Pan troglodytes ]]
[[Category:Genes with homologs in Rattus norvegicus ]]
[[Category:Genes with homologs in Saccharomyces cerevisiae ]]
[[Category:Genes with homologs in Schizosaccharomyces pombe ]]
[[Category:Genes with homologs in Takifugu rubripes ]]
[[Category:Genes with homologs in Xenopus tropicalis ]]
[[Category:Genes with homologs in Shigella flexneri ]]
[[Category:Genes with homologs in E. coli O157]]

Latest revision as of 08:30, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000025304 (score: 1.000; bootstrap: 73%)
  • ENSANGP00000009410 (score: 0.345)
  • ENSANGP00000013163 (score: 0.130)
  • ENSANGP00000028462 (score: 0.101)
  • ENSANGP00000029072 (score: 0.087)
  • ENSANGP00000012395 (score: 0.081)
  • ENSANGP00000026915 (score: 0.079)
  • ENSANGP00000012515 (score: 0.076)
  • ENSANGP00000014553 (score: 0.069)
  • ENSANGP00000012681 (score: 0.067)
  • ENSANGP00000003753 (score: 0.054)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G48600 (score: 1.000; bootstrap: 70%)
  • AT3G54670 (score: 0.110)
  • AT5G62410 (score: 0.068)
  • AT3G47460 (score: 0.066)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00028930 (score: 1.000; bootstrap: 51%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00003367 (score: 1.000; bootstrap: 59%)
  • WBGene00004873 (score: 0.063)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000019358 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000019902 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000019916 (score: 0.976)
  • ENSCINP00000002997 (score: 0.095)
  • ENSCINP00000019026 (score: 0.072)
  • ENSCINP00000001565 (score: 0.068)
  • ENSCINP00000016764 (score: 0.066)
  • ENSCINP00000000142 (score: 0.054)
  • ENSCINP00000000143 (score: 0.051)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030408-4 (score: 1.000; bootstrap: 65%)
  • ZDB-CDNA-040425-456 (score: 0.898)
  • ZDB-GENE-030429-36 (score: 0.064)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0029688 (score: 1.000; bootstrap: 54%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000025260 (score: 1.000; bootstrap: 64%)
  • ENSGALP00000013963 (score: 0.084)
  • ENSGALP00000015535 (score: 0.052)

From Inparanoid:20070104

Mus musculus

  • MGI:3045962 (score: 1.000; bootstrap: 73%)
  • MGI:3529431 (score: 0.200)
  • MGI:108084 (score: 0.094)

From Inparanoid:20070104

Oryza gramene

  • Q7F099 (score: 1.000; bootstrap: 50%)
  • Q84VF9 (score: 0.599)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000046513 (score: 1.000; bootstrap: 62%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000046012 (score: 1.000; bootstrap: 72%)
  • ENSRNOP00000029356 (score: 0.121)
  • ENSRNOP00000012373 (score: 0.059)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YFR031C (score: 1.000; bootstrap: 66%)
  • YJL074C (score: 0.093)
  • YFL008W (score: 0.075)
  • YLR086W (score: 0.070)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC14864c (score: 1.000; bootstrap: 100%)
  • SPCC1628c (score: 0.081)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000156381 (score: 1.000; bootstrap: 72%)
  • NEWSINFRUP00000157894 (score: 0.517)
  • NEWSINFRUP00000174922 (score: 0.507)
  • NEWSINFRUP00000163156 (score: 0.507)
  • NEWSINFRUP00000180129 (score: 0.497)
  • NEWSINFRUP00000143265 (score: 0.488)
  • NEWSINFRUP00000179462 (score: 0.483)
  • NEWSINFRUP00000151248 (score: 0.481)
  • NEWSINFRUP00000132857 (score: 0.444)
  • NEWSINFRUP00000150658 (score: 0.361)
  • NEWSINFRUP00000168713 (score: 0.243)
  • NEWSINFRUP00000163074 (score: 0.241)
  • NEWSINFRUP00000173334 (score: 0.217)
  • NEWSINFRUP00000163073 (score: 0.215)
  • NEWSINFRUP00000148968 (score: 0.208)
  • NEWSINFRUP00000161111 (score: 0.198)
  • NEWSINFRUP00000179678 (score: 0.159)
  • NEWSINFRUP00000166748 (score: 0.156)
  • NEWSINFRUP00000178792 (score: 0.144)
  • NEWSINFRUP00000172455 (score: 0.138)
  • NEWSINFRUP00000177516 (score: 0.101)
  • NEWSINFRUP00000163147 (score: 0.100)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000040488 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Shigella flexneri

SBCC

From SHIGELLACYC

E. coli O157

SBCC

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Panther (EcoliWiki Page)

PTHR18937:SF1

EcoCyc

EcoCyc:EG10927

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10927

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000916

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0920

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001381

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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