Phage lambda O:Gene: Difference between revisions

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|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
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|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
|}
[[Category:Gene List:Phage lambda]]
</noinclude><protect>
</noinclude><protect>
==Nomenclature==
==Nomenclature==
{{BacktoTop}}
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{|  class=" tableEdit Gene_nomenclature_table" 
 
|-
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!{{table_heading_style}} |Standard name
!align=left {{table_heading_style}} |Standard name
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''Phage lambda O''  
''Phage lambda O''
|-
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!{{table_heading_style}} |Mnemonic
!align=left {{table_heading_style}} |Mnemonic
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|-
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!{{table_heading_style}} |Synonyms
!align=left {{table_heading_style}} |Synonyms
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''O, lambdap89''
''O, lambdap89''
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  class=" tableEdit Gene_location_table" 
|- {{table_heading_style}}
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!Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
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NC_001416
[[BW2952]]
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&nbsp;
 
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NC_001416: 38686..39585<br />{{GBrowseFigureByCoord|37686|40585|bacteriophage_lambda|NC_001416}}  
NC_012759: 4144287..4145186<br />{{GBrowseFigureByCoord|4144287|4145186|BW2952|NC_012759}}
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*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/bacteriophage_lambda/?q=NC_001416:37686..40585 GBrowse(bacteriophage_lambda)]
{{GBrowseLink|BW2952|NC_012759|4144287|4145186|GBrowse (BW2952)}}
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*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/bacteriophage_lambda/?plugin=FastaDumper&name=NC_001416:38686..39585&plugin_action=Go FASTA Dump]
{{GBrowseFastaLink|BW2952|NC_012759|4144287|4145186|FASTA Dump}}
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NC_001416
NC_001416
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&nbsp;
 
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NC_001416: 38686..39585<br />{{GBrowseFigureByCoord|37686|40585|bacteriophage_lambda|NC_001416}}  
NC_001416: 38686..39585<br />{{GBrowseFigureByCoord|38686|39585|bacteriophage_lambda|NC_001416}}
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*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/bacteriophage_lambda/?q=NC_001416:37686..40585 GBrowse(bacteriophage_lambda)]
{{GBrowseLink|bacteriophage_lambda|NC_001416|38686|39585|Gbrowse (Bacteriophage lambda)}}
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*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/bacteriophage_lambda/?plugin=FastaDumper&name=NC_001416:38686..39585&plugin_action=Go FASTA Dump]
{{GBrowseFastaLink|bacteriophage_lambda|NC_001416|38686|39585|FASTA Dump}}
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!Feature type!!Location!!Description
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
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==Alleles and Phenotypes==
==Alleles and Phenotypes==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  class=" tableEdit Gene_allele_table dataTable" 
|- {{table_heading_style}}
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!Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
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&nbsp;
ti-12
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c &rarr;a on the + strand at bp 39122
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ti-12
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c &rarr;a on the + strand at bp 39122
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ric5b
ric5b
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c &rarr;t on the + strand at bp 39268
c &rarr;t on the + strand at bp 39268
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ric5b
ric5b
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g &rarr;a on the + strand at bp 39292
g &rarr;a on the + strand at bp 39292
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<protect><!--Alleles_notes--></protect>
===Notes===
===Notes===


==Genetic Interactions==
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<!-- Genetic Interacdtions Notes -->
===Notes===


==Genetic Resources==
==Genetic Resources==
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|- {{table_heading_style}}
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene Genbank] ([[Genbank|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene Genbank] ([[Genbank|EcoliWiki Page]])
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[http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=&term=3827060 Genbank:3827060]
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=&term=3827060 Genbank:3827060]
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[http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=&term=3827060 Genbank:3827060] 
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==Links==
==Links==
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<references/>
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__NOTOC__
__NOTOC__
</protect></noinclude>
===Categories===
[[Category:Gene List:Phage lambda]]
[[Category:Gene_List:BW2952]]

Latest revision as of 20:36, 19 September 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

Phage lambda O

Mnemonic
Synonyms

O, lambdap89

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Notes

Location(s) and DNA Sequence

[back to top]


See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

BW2952

NC_012759: 4144287..4145186
gbrowse_img.php?coord=4144287..4145186&genome=BW2952&name=NC_012759&trackset=0&width=300&.png

NC_001416

NC_001416: 38686..39585
gbrowse_img.php?coord=38686..39585&genome=bacteriophage_lambda&name=NC_001416&trackset=0&width=300&.png

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

ti-12

c →a on the + strand at bp 39122

 

 

 

 

 

 

ric5b

c →t on the + strand at bp 39268

 

 

 

 

 

 

ric5b

g →a on the + strand at bp 39292

 

 

 

 

 

 

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference
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See Help:Gene_resources for help entering information into the Genetic Resources table.

Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Genbank (EcoliWiki Page)

Genbank:3827060


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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Notes

Links

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Name URL Comments
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<protect>

References

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See Help:References for how to manage references in EcoliWiki.


Categories

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