Phage lambda cI:Gene: Difference between revisions

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<noinclude>{{TabsTop}}  
<noinclude>{{TabsTop}}  
{{Tab|Quickview|Phage lambda cI}}{{Tab On|Gene|Phage lambda cI}}{{Tab|Gene Product(s)|Phage lambda cI}}{{Tab|Expression|Phage lambda cI}}{{Tab|Evolution|Phage lambda cI}}{{Tab|On One Page|Phage lambda cI}}{{TabsBottom}}
{{Tab|Quickview|Phage lambda cI}}{{Tab On|Gene|Phage lambda cI}}{{Tab|Gene Product(s)|Phage lambda cI}}{{Tab|Expression|Phage lambda cI}}{{Tab|Evolution|Phage lambda cI}}{{Tab|On One Page|Phage lambda cI}}{{TabsBottom}}
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|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Nomenclature |Nomenclature]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Location(s) and DNA Sequence|Location(s) and DNA Sequence]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
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</noinclude><protect>
</noinclude><protect>
==Nomenclature==
==Nomenclature==
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{|  class=" tableEdit Gene_nomenclature_table" 
 
|-
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!{{table_heading_style}} |Standard name
!align=left {{table_heading_style}} |Standard name
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''Phage lambda cI''
|
''Phage lambda cI''
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''Phage lambda cI''  
''Phage lambda cI''  
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!{{table_heading_style}} |Mnemonic
!align=left {{table_heading_style}} |Mnemonic
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|-
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!{{table_heading_style}} |Synonyms
!align=left {{table_heading_style}} |Synonyms
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''cI, lambdap88''
''cI, lambdap88''
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''cI, lambdap88''
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''cI, lambdap88''
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===Notes===
===Notes===
 
cI is c for clear plaque and Roman numeral I for one of three complementation groups that give clear plaques.


==Location(s) and DNA Sequence==
==Location(s) and DNA Sequence==
{{BacktoTop}}
<protect>
<protect>
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  class=" tableEdit Gene_location_table" 
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!Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
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NC_001416
[[BW2952]]
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&nbsp;
 
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NC_001416: 37940..37227<br />{{GBrowseFigureByCoord|36227|38940|bacteriophage_lambda|NC_001416}}
NC_012759: 4142828..4143541<br /><gbrowseImage>
name=NC_012759:4142828..4143541
source=BW2952
preset=GeneLocation
</gbrowseImage>
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*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/bacteriophage_lambda/?q=NC_001416:36227..38940 GBrowse(bacteriophage_lambda)]
{{GBrowseLink|BW2952|NC_012759|4142828|4143541|GBrowse (BW2952)}}
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*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/bacteriophage_lambda/?plugin=FastaDumper&name=NC_001416:37227..37940&plugin_action=Go FASTA Dump]
{{GBrowseFastaLink|BW2952|NC_012759|4142828|4143541|FASTA Dump}}
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NC_001416
NC_001416
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&nbsp;
 
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NC_001416: 37940..37227<br />{{GBrowseFigureByCoord|36227|38940|bacteriophage_lambda|NC_001416}}
NC_001416: 37940..37227<br /><gbrowseImage>
name=NC_001416:37227..37940
source=bacteriophage_lambda
preset=GeneLocation
</gbrowseImage>
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*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/bacteriophage_lambda/?q=NC_001416:36227..38940 GBrowse(bacteriophage_lambda)]
{{GBrowseLink|bacteriophage_lambda|NC_001416|37940|37227|Gbrowse (Bacteriophage lambda)}}
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*[http://dimer.tamu.edu/cgi-bin/gb/gbrowse/bacteriophage_lambda/?plugin=FastaDumper&name=NC_001416:37227..37940&plugin_action=Go FASTA Dump]
{{GBrowseFastaLink|bacteriophage_lambda|NC_001416|37940|37227|FASTA Dump}}
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==Sequence Features==
==Sequence Features==
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!Feature type!!Location!!Description
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
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==Alleles and Phenotypes==
==Alleles and Phenotypes==
{{BacktoTop}}
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  class=" tableEdit Gene_allele_table dataTable" 
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!Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!CGSC Mutation ID #
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
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cIam504
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&nbsp;
g &rarr;c on the + strand at bp 37308
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cIam14
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c &rarr;a on the + strand at bp 37287
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cIam505
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g &rarr;a on the + strand at bp 37313
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ind1
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c &rarr;t on the + strand at bp 37589
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cIam499
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g &rarr;c on the + strand at bp 37629
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cIam212
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a &rarr;c on the + strand at bp 37635
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cIam34
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c &rarr;a on the + strand at bp 37680
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strain ci857s7([25])
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c &rarr;t on the + strand at bp 37742
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cIam282
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g &rarr;a on the + strand at bp 37808
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cIam302
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a &rarr;c on the + strand at bp 37872
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===Notes===
===Notes===


==Genetic Interactions==
{{BacktoTop}}
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.104185.Z4e04b606e2e01-->
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===Notes===


==Genetic Resources==
==Genetic Resources==
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==Accessions in Other Databases==
==Accessions in Other Databases==
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|- {{table_heading_style}}
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
 
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|- class="tableEdit_footer"
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene Genbank] ([[Genbank|EcoliWiki Page]])
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79..J46b16f6e02330&page=104185&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
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[http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=&term=3827059 Genbank:3827059] 
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[http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene Genbank] ([[Genbank|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=&term=3827059 Genbank:3827059] 
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==Links==
==Links==
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<noinclude><protect>
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==References==
==References==
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{{RefHelp}}
{{RefHelp}}
<references/>
<references />
__NOTOC__
__NOTOC__
[[Category:Gene List:Phage lambda]]</protect></noinclude>
===Categories===
[[Category:Gene List:Phage lambda]]
[[Category:Gene_List:BW2952]]

Latest revision as of 20:36, 19 September 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

Phage lambda cI

Mnemonic
Synonyms

cI, lambdap88

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See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Notes

cI is c for clear plaque and Roman numeral I for one of three complementation groups that give clear plaques.

Location(s) and DNA Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

BW2952

NC_012759: 4142828..4143541
<gbrowseImage> name=NC_012759:4142828..4143541 source=BW2952 preset=GeneLocation </gbrowseImage>

NC_001416

NC_001416: 37940..37227
<gbrowseImage> name=NC_001416:37227..37940 source=bacteriophage_lambda preset=GeneLocation </gbrowseImage>

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Notes

Sequence Features

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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
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See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Notes

Alleles and Phenotypes

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments

cIam504

g →c on the + strand at bp 37308

 

 

 

 

 

 

cIam14

c →a on the + strand at bp 37287

 

 

 

 

 

 

cIam505

g →a on the + strand at bp 37313

 

 

 

 

 

 

ind1

c →t on the + strand at bp 37589

 

 

 

 

 

 

cIam499

g →c on the + strand at bp 37629

 

 

 

 

 

 

cIam212

a →c on the + strand at bp 37635

 

 

 

 

 

 

cIam34

c →a on the + strand at bp 37680

 

 

 

 

 

 

strain ci857s7([25])

c →t on the + strand at bp 37742

 

 

 

 

 

 

cIam282

g →a on the + strand at bp 37808

 

 

 

 

 

 

cIam302

a →c on the + strand at bp 37872

 

 

 

 

 

 

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See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Notes

Genetic Interactions

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Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference
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See Help:Gene_resources for help entering information into the Genetic Resources table.

Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes
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Notes

Links

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Name URL Comments
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References

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