rppH:Quickview: Difference between revisions
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* ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. ** | * ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. ** | ||
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{| id="X49b0238a7621e" class=" tableEdit New_Quickview_Table" | {| id="X49b0238a7621e" class=" tableEdit New_Quickview_Table" | ||
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!align=left {{table_heading_style}} |Gene Synonym(s) | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''nudH, ECK2826, b2830, JW2798, ydgP, ygdP''<ref name='LIB:Riley_2006'/> | ''nudH, ECK2826, b2830, JW2798, ydgP, ygdP''<ref name='LIB:Riley_2006'/>, ygdP'' | ||
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!align=left {{table_heading_style}} |Product Desc. | !align=left {{table_heading_style}} |Product Desc. | ||
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!align=left {{table_heading_style}} |Product Synonyms(s) | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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NudH,nucleotide hydrolase<ref name='LIB:Riley_2006'/>, B2830<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NudH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgdP<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ''NudH,nucleotide hydrolase<ref name='LIB:Riley_2006'/>, B2830<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NudH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgdP<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ECK2826, JW2798, nudH, ygdP, b2830'' | ||
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!align=left {{table_heading_style}} |Function from GO | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left {{table_heading_style}} |Quick Links | !align=left {{table_heading_style}} |Quick Links | ||
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[http://porteco.org/AjaxSearch.jsp?searchString=rppH&s=search | [[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=rppH&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7459]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120004022&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=rppH&loc=MG1655%3A2966999..2966469,W3110%3A2967633..2967103,BW2952%3A2853617..2854147]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2853617&end=2854147&gene=rppH&aa=midddgyrpnvgivicnrqgqvmwarrfgqhswqfpqgginpgesaeqamyrelfeevglsrkdvrilastrnwlryklpkrlvrwdtkpvcigqkqkwfllqlvsgdaeinmqtsstpefdgwrwvsywypvrqvvsfkrdvyrrvmkefasvvmslqentpkpqnasayrrkrg]] [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rppH+AND+escherichia+coli]] [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=rppH]] | ||
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Latest revision as of 21:46, 27 May 2013
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
| Standard Name |
rppH [1] |
|---|---|
| Gene Synonym(s) |
nudH, ECK2826, b2830, JW2798, ydgP, ygdP[2], ygdP |
| Product Desc. |
RNA pyrophosphohydrolase (removes the 5'-pyrophosphate from mRNAs and initiates degradation by the 5'-end dependent pathway)[1]; putative invasion protein[3][4] RNA pyrophosphohydrolase, destabilizes primary transcripts[5] |
| Product Synonyms(s) |
NudH,nucleotide hydrolase[2], B2830[3][2], NudH[3][2], YgdP[3][2], ECK2826, JW2798, nudH, ygdP, b2830 |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype |
Many mRNAs have an increased half-life. [1] |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links |
|
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
Nudix hydrolase. RppH removes 5' triphosphate from primary transcripts, enhancing RNase E activity (Deana, 2008). Required for invasion of cultured mammalian cells by both E. coli K1 and S. typhimurium. NudH also hydrolyzes Ap5A and Ap4A. Ribosome-associated protein (Jiang, 2007).[5]
References
- ↑ 1.0 1.1 1.2 Deana, A et al. (2008) The bacterial enzyme RppH triggers messenger RNA degradation by 5' pyrophosphate removal. Nature 451 355-8 PubMed
- ↑ 2.0 2.1 2.2 2.3 2.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 5.0 5.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.