yjbH:Quickview: Difference between revisions
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!align=left {{table_heading_style}} |Gene Synonym(s) | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK4021, b4029, JW3989''<ref name='LIB:Riley_2006'/> | ''ECK4021, b4029, JW3989''<ref name='LIB:Riley_2006'/>, JW3989'' | ||
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!align=left {{table_heading_style}} |Product Desc. | !align=left {{table_heading_style}} |Product Desc. | ||
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!align=left {{table_heading_style}} |Product Synonyms(s) | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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predicted porin<ref name='LIB:Riley_2006'/>, B4029<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YjbH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ''predicted porin<ref name='LIB:Riley_2006'/>, B4029<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YjbH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK4021, JW3989, b4029'' | ||
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!align=left {{table_heading_style}} |Function from GO | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left {{table_heading_style}} |Quick Links | !align=left {{table_heading_style}} |Quick Links | ||
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[http://ecoliwiki.net/tools/display_dna.php?gene=yjbH&loc=MG1655 | [[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yjbH&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11926]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001854&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yjbH&loc=MG1655%3A4235657..4237753,W3110%3A4241224..4243320,REL606%3A4216566..4218662,DH10B%3A4335353..4337449,BW2952%3A4125337..4127433]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4125337&end=4127433&gene=yjbH&aa=mkkrhllsllalgistacygetypapigpsqsdfggvgllqtptarmaregelslnyrdndqyryysasvqlfpwlettlrytdvrtrqyssveafsgdqtykdkafdlklrlweesywlpqvavgardiggtglfdaeylvaskawgpfdftlglgwgylgtsgnvknplcsasdkycyrdnsykqagsidgsqmfhgpaslfggveyqtpwqplrlkleyegnnyqqdfagkleqkskfnvgaiyrvtdwadvnlsyergntfmfgvtlrtnfndlrpsyndnarpqyqpqpqdailqhsvvanqltllkynagladpqiqakgdtlyvtgeqvkyrdsregiiranrivmndlpdgiktiritenrlnmpqvttetdvaslknhlageplghettlaqkrvepvvpqsteqgwyidksrfdfhidpvlnqsvggpenfymyqlgvmgtadlwltdhllttgslfanlannydkfnytnppqdshlprvrthvreyvqndvyvnnlqanyfqhlgngfygqvyggyletmfggagaevlyrpldsnwafgldanyvkqrdwrsakdmmkftdysvktghltaywtpsfaqdvlvkasvgqylagdkggtleiakrfdsgvvvggyatitnvskeeygegdftkgvyvsvpldlfssgptrsraaigwtpltrdggqqlgrkfqlydmtsdrsvnfr]] [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yjbH+AND+escherichia+coli]] [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yjbH]] | ||
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Latest revision as of 21:56, 27 May 2013
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
| Standard Name |
yjbH |
|---|---|
| Gene Synonym(s) |
ECK4021, b4029, JW3989[1], JW3989 |
| Product Desc. |
conserved protein, putative lipoprotein and/or outer membrane porin[2]; predicted porin[3] Extracellular polysaccharide production[4] |
| Product Synonyms(s) |
predicted porin[1], B4029[2][1], YjbH[2][1] , ECK4021, JW3989, b4029 |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links |
|
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
Overexpression of the yjbEFGH operon alters colony morphology and leads to production of a novel extracellular polysaccharide (Ferrieres, 2007). yjbH and gfcD are paralogs. YjbH has both type II (18 aa) and (somewhat better) type I (21 aa) signal peptide predictions by LipoP. YjbH is not likely to be a lipoprotein because the lipobox Cys is poorly conserved.[4]
References
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.