Cis Element:SBS: Difference between revisions

Latest revision as of 08:44, 27 May 2013

Cis element summary table

Standard Name	SBS
Synonyms	SlmA binding sequences
Function
Location
SO terms
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Notes

Location and Sequence

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See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain	Map location	Genome coordinates	Genome browsers	Sequence links
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Notes

Interactions

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See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	References	Evidence
Protein	SlmA	PMID:21321206^[1]	Figure 2 and S7- EMSA
Protein	SlmA	PMID:21113127^[2]	ChIP
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Notes

Mutant alleles and phenotypes

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Allele	Nt change(s)	Phenotype: Type	Phenotype: Description	Reference	Availability	Comments
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Notes

Genetic Resources

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See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource	Resource Type	Source	Notes/Reference
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Notes

Accessions

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
EcoCyc	EcoCyc:	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:	Escherichia coli str. K-12 substr. MG1655
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Notes

References

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See Help:References for how to manage references in EcoliWiki.

↑ Cho, H et al. (2011) Nucleoid occlusion factor SlmA is a DNA-activated FtsZ polymerization antagonist. Proc. Natl. Acad. Sci. U.S.A. 108 3773-8 PubMed
↑ Tonthat, NK et al. (2011) Molecular mechanism by which the nucleoid occlusion factor, SlmA, keeps cytokinesis in check. EMBO J. 30 154-64 PubMed

===Categories===

[PMID:21321206-1] Cho, H et al. (2011) Nucleoid occlusion factor SlmA is a DNA-activated FtsZ polymerization antagonist. Proc. Natl. Acad. Sci. U.S.A. 108 3773-8 PubMed

[PMID:21113127-2] Tonthat, NK et al. (2011) Molecular mechanism by which the nucleoid occlusion factor, SlmA, keeps cytokinesis in check. EMBO J. 30 154-64 PubMed

[1]

[2]

@@ Line 1: / Line 1: @@
 __NOTOC__
 ==Cis element summary table==
-<newTableEdit>Template:Cis_element_summary_table</newTableEdit>
+<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.177555.S4d9b7ca1856b0-->
+<!--
+******************************************************************************************
+*
+*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
+*
+****************************************************************************************** -->
+{|   id="S4d9b7ca1856b0"  class=" tableEdit Cis_element_summary_table"
+|-
+!align=left {{table_heading_style}} |Standard Name
+||
+SBS
+|-
+!align=left {{table_heading_style}} |Synonyms
+||
+SlmA binding sequences
+|-
+!align=left {{table_heading_style}} |Function
+||
+|-
+!align=left {{table_heading_style}} |Location
+||
+|-
+!align=left {{table_heading_style}} |SO terms
+||
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.177555.S4d9b7ca1856b0&page=177555&pagename={{FULLPAGENAMEE}}&type=1&template=Cis_element_summary_table edit table]</span> ||
+|}
+<!--box uid=63ce1649aab8b3180235b0af7618f667.177555.S4d9b7ca1856b0--></protect>
 ===Notes===
 == Location and Sequence ==
 {{BacktoTop}}
-<newTableEdit>Template:Gene_location_table</newTableEdit>
+<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.177555.A4d9b7ca18f7f5-->
+<!--
+******************************************************************************************
+*
+*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
+*
+****************************************************************************************** -->{{Gene_location_help}}
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="A4d9b7ca18f7f5"  class=" tableEdit Gene_location_table"
+|- {{table_heading_style}}
+!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.177555.A4d9b7ca18f7f5&page=177555&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table]</span> || || || ||
+|}
+<!--box uid=63ce1649aab8b3180235b0af7618f667.177555.A4d9b7ca18f7f5--></protect>
 ===Notes===
@@ Line 12: / Line 59: @@
 == Interactions==
 {{BacktoTop}}
-<newTableEdit>Template:Product_interactions_table</newTableEdit>
+<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.177555.U4d9b7ca192e3d-->
+<!--
+******************************************************************************************
+*
+*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
+*
+****************************************************************************************** -->{{Product_interactions_help}}
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="U4d9b7ca192e3d"  class=" tableEdit Product_interactions_table dataTable"
+|- {{table heading style}}
+!|Partner Type!!Partner!!Notes!!References!!Evidence
+|-
+|
+Protein
+|
+SlmA
+|
+|
+PMID:21321206
+|
+Figure 2 and S7- EMSA
+|-
+|
+Protein
+|
+SlmA
+|
+|
+PMID:21113127
+|
+ChIP
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.177555.U4d9b7ca192e3d&page=177555&pagename={{FULLPAGENAMEE}}&type=0&template=Product_interactions_table edit table]</span> || || || ||
+|}
+<!--box uid=63ce1649aab8b3180235b0af7618f667.177555.U4d9b7ca192e3d--></protect>
 ===Notes===
@@ Line 18: / Line 101: @@
 == Mutant alleles and phenotypes ==
 {{BacktoTop}}
-<newTableEdit>Template:Cis_Element_allele_table</newTableEdit>
+<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.177555.X4d9b7ca1972c4-->
+<!--
+******************************************************************************************
+*
+*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
+*
+****************************************************************************************** -->
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="X4d9b7ca1972c4"  class=" tableEdit Cis_Element_allele_table"
+|- {{table_heading_style}}
+!|Allele!!Nt change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.177555.X4d9b7ca1972c4&page=177555&pagename={{FULLPAGENAMEE}}&type=0&template=Cis_Element_allele_table edit table]</span> || || || || || ||
+|}
+<!--box uid=63ce1649aab8b3180235b0af7618f667.177555.X4d9b7ca1972c4--></protect>
 ===Notes===
@@ Line 24: / Line 121: @@
 == Genetic Resources ==
 {{BacktoTop}}
-<newTableEdit>Template:Gene resource table </newTableEdit>
+<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.177555.O4d9b7ca1993d6-->
+<!--
+******************************************************************************************
+*
+*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
+*
+****************************************************************************************** -->{{Gene_resources_help}}
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="O4d9b7ca1993d6"  class=" tableEdit Gene_resource_table"
+|- {{table_heading_style}}
+!|Resource!!Resource Type!!Source!!Notes/Reference
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.177555.O4d9b7ca1993d6&page=177555&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_resource_table edit table]</span> || || ||
+|}
+<!--box uid=63ce1649aab8b3180235b0af7618f667.177555.O4d9b7ca1993d6--></protect>
 ===Notes===
 == Accessions ==
 {{BacktoTop}}
-<newTableEdit>Template:Gene accessions table</newTableEdit>
+<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.177555.F4d9b7ca19b587-->
+<!--
+******************************************************************************************
+*
+*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
+*
+****************************************************************************************** -->{{Gene_accessions_help}}
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="F4d9b7ca19b587"  class=" tableEdit Gene_accessions_table"
+|- {{table_heading_style}}
+!|Database!!Accession!!Notes
+|-
+|
+[[EcoCyc]]
+|
+EcoCyc:
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[EcoGene]]
+|
+EcoGene:
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[RegulonDB]]
+|
+RegulonDB:
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[EchoBASE]]
+|
+EchoBASE:
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[ASAP]]
+|
+ASAP:
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.177555.F4d9b7ca19b587&page=177555&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
+|}
+<!--box uid=63ce1649aab8b3180235b0af7618f667.177555.F4d9b7ca19b587--></protect>
 ===Notes===
@@ Line 38: / Line 198: @@
 <references/>
-===Categories===
+===Categories===[[Category:Cis_Element]]

Cis Element:SBS: Difference between revisions

Latest revision as of 08:44, 27 May 2013

Cis element summary table

Notes

Location and Sequence

Notes

Interactions

Notes

Mutant alleles and phenotypes

Notes

Genetic Resources

Notes

Accessions

Notes

References

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