fklB:Evolution: Difference between revisions

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deleting Pfam from accessions table on evolution pages
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!|Organism!!Homologs (Statistics)!!Comments
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!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00254 PF00254  FKBP-type peptidyl-prolyl cis-trans isomerase]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF01346 PF01346  Domain amino terminal to FKBP-type peptidyl-prolyl isomerase]
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[[EcoCyc]]
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EcoCyc:G7865
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG12503
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120004360
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB2396
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0013759
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:38, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000014683 (score: 1.000; bootstrap: 89%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000002177 (score: 1.000; bootstrap: 100%)
  • ENSAPMP00000008197 (score: 0.193)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G25220 (score: 1.000; bootstrap: 95%)
  • AT5G48580 (score: 1.000; bootstrap: 94%)
  • AT3G25230 (score: 0.097)
  • AT5G48570 (score: 0.085)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000008269 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000018091 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000010928 (score: 0.857)
  • ENSBTAP00000011007 (score: 0.791)
  • ENSBTAP00000004419 (score: 0.729)
  • ENSBTAP00000019874 (score: 0.489)
  • ENSBTAP00000021025 (score: 0.085)
  • ENSBTAP00000033613 (score: 0.080)
  • ENSBTAP00000020071 (score: 0.080)
  • ENSBTAP00000001452 (score: 0.080)
  • ENSBTAP00000015220 (score: 0.070)
  • ENSBTAP00000009998 (score: 0.068)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00027056 (score: 1.000; bootstrap: 100%)
  • WBGene00028338 (score: 1.000; bootstrap: 100%)
  • WBGene00027120 (score: 0.284)
  • WBGene00038380 (score: 0.176)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00001426 (score: 1.000; bootstrap: 100%)
  • WBGene00001428 (score: 0.163)
  • WBGene00001431 (score: 0.118)
  • WBGene00001427 (score: 0.094)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000010138 (score: 1.000; bootstrap: 70%)
  • ENSCAFP00000021476 (score: 1.000; bootstrap: 50%)
  • ENSCAFP00000005884 (score: 0.786)
  • ENSCAFP00000012923 (score: 0.095)
  • ENSCAFP00000004543 (score: 0.090)
  • ENSCAFP00000022934 (score: 0.089)
  • ENSCAFP00000001930 (score: 0.089)
  • ENSCAFP00000004699 (score: 0.085)
  • ENSCAFP00000023374 (score: 0.055)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000018088 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030131-7275 (score: 1.000; bootstrap: 89%)
  • ZDB-CDNA-040425-1480 (score: 1.000; bootstrap: 90%)
  • ZDB-CDNA-040926-17 (score: 0.896)
  • ZDB-GENE-040927-9 (score: 0.896)
  • ZDB-CDNA-040425-2725 (score: 0.784)
  • ZDB-GENE-040426-1785 (score: 0.784)
  • ZDB-CDNA-040625-124 (score: 0.194)
  • ZDB-GENE-030131-514 (score: 0.194)
  • ZDB-CDNA-040425-301 (score: 0.187)
  • ZDB-GENE-030616-419 (score: 0.052)
  • ZDB-GENE-050522-470 (score: 0.052)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0203130 (score: 1.000; bootstrap: 97%)
  • DDB0205305 (score: 0.089)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0037930 (score: 1.000; bootstrap: 63%)
  • FBgn0010470 (score: 0.188)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA13197-PA (score: 1.000; bootstrap: 100%)
  • GA22070-PA (score: 0.210)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000026566 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000001396 (score: 0.116)
  • ENSGALP00000029868 (score: 0.094)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000262925 (score: 1.000; bootstrap: 100%)
  • ENSP00000310935 (score: 1.000; bootstrap: 100%)
  • ENSP00000348493 (score: 0.926)
  • ENSP00000238793 (score: 0.793)
  • ENSP00000001008 (score: 0.104)
  • ENSP00000317232 (score: 0.078)
  • ENSP00000338160 (score: 0.074)
  • ENSP00000242209 (score: 0.073)
  • ENSP00000222803 (score: 0.068)
  • ENSP00000256680 (score: 0.068)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000016995 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000015350 (score: 0.078)
  • ENSMMUP00000017150 (score: 0.074)
  • ENSMMUP00000009153 (score: 0.069)
  • ENSMMUP00000016447 (score: 0.064)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000024390 (score: 1.000; bootstrap: 66%)
  • ENSMODP00000002601 (score: 0.478)
  • ENSMODP00000022886 (score: 0.092)

From Inparanoid:20070104

Mus musculus

  • MGI:95541 (score: 1.000; bootstrap: 100%)
  • MGI:95542 (score: 1.000; bootstrap: 100%)
  • MGI:1336205 (score: 0.744)
  • MGI:95543 (score: 0.090)
  • MGI:104670 (score: 0.090)
  • MGI:1350921 (score: 0.080)
  • MGI:2387639 (score: 0.080)
  • MGI:1913370 (score: 0.075)
  • MGI:1336879 (score: 0.070)
  • MGI:104769 (score: 0.055)

From Inparanoid:20070104

Oryza gramene

  • Q70YJ6 (score: 1.000; bootstrap: 90%)
  • Q5N801 (score: 0.645)
  • Q43207 (score: 0.091)
  • Q9XFE4 (score: 0.091)
  • Q7F1F2 (score: 0.091)
  • Q6K5Q1 (score: 0.077)
  • Q653Z1 (score: 0.059)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000006573 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000015638 (score: 0.083)
  • ENSPTRP00000032579 (score: 0.069)
  • ENSPTRP00000032523 (score: 0.069)
  • ENSPTRP00000008361 (score: 0.064)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000012608 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000028725 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000019527 (score: 0.080)
  • ENSRNOP00000007821 (score: 0.075)
  • ENSRNOP00000015722 (score: 0.070)
  • ENSRNOP00000022029 (score: 0.065)
  • ENSRNOP00000013205 (score: 0.065)
  • ENSRNOP00000008737 (score: 0.061)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YDR519W (score: 1.000; bootstrap: 100%)
  • YNL135C (score: 0.112)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC8397c (score: 1.000; bootstrap: 55%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000162512 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000139297 (score: 0.619)
  • NEWSINFRUP00000129987 (score: 0.134)
  • NEWSINFRUP00000144593 (score: 0.090)
  • NEWSINFRUP00000128779 (score: 0.075)
  • NEWSINFRUP00000147444 (score: 0.067)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00009727001 (score: 1.000; bootstrap: 100%)
  • GSTENP00023507001 (score: 1.000; bootstrap: 100%)
  • GSTENP00018378001 (score: 0.654)

From Inparanoid:20070104

E. coli O157

FKLB

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase

Pfam (EcoliWiki Page)

PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase

Panther (EcoliWiki Page)

PTHR10516:SF17

Superfamily (EcoliWiki Page)

SUPERFAMILY:54534

EcoCyc

EcoCyc:G7865

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12503

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004360

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2396

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013759

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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