rpoS:Evolution: Difference between revisions

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!|Organism!!Homologs (Statistics)!!Comments
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!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00140 PFAM:PF00140]
[http://pfam.janelia.org/family/PF04542 PF04542  Sigma-70 region 2 ]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF04545 PF04545  Sigma-70, region 4]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=88946 SUPERFAMILY:88946]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00140 PF00140  Sigma-70 factor, region 1.2]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF04539 PF04539  Sigma-70 region 3]
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[[EcoCyc]]
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EcoCyc:EG10510
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10510
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000503
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0505
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0009001
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:35, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT2G36990 (score: 1.000; bootstrap: 76%)
  • AT1G08540 (score: 0.108)

From Inparanoid:20070104

Oryza gramene

  • Q53JE7 (score: 1.000; bootstrap: 98%)
  • Q53KH8 (score: 1.000; bootstrap: 98%)
  • Q7XXT0 (score: 0.998)
  • Q9ZPL2 (score: 0.696)
  • Q53KH7 (score: 0.568)
  • Q84Q84 (score: 0.471)
  • Q9ZPL1 (score: 0.400)
  • Q84LK8 (score: 0.059)
  • Q8RWR8 (score: 0.052)
  • Q9ZPL0 (score: 0.050)
  • Q6L565 (score: 0.050)
  • Q6I5E7 (score: 0.050)

From Inparanoid:20070104

E. coli O157

RPOS

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF04542 Sigma-70 region 2

Pfam (EcoliWiki Page)

PF04545 Sigma-70, region 4

Superfamily (EcoliWiki Page)

SUPERFAMILY:88659

Superfamily (EcoliWiki Page)

SUPERFAMILY:88659

Superfamily (EcoliWiki Page)

SUPERFAMILY:88946

Pfam (EcoliWiki Page)

PF00140 Sigma-70 factor, region 1.2

Pfam (EcoliWiki Page)

PF04539 Sigma-70 region 3

EcoCyc

EcoCyc:EG10510

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10510

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000503

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0505

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009001

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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