ythA:Gene: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
Page created by Epoch
 
touch
 
(13 intermediate revisions by 2 users not shown)
Line 10: Line 10:
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
{{TabsTop}}  
{{TabsTop}}  
{{Tab|Quickview|{{{1}}}}}{{Tab On|Gene|{{{1}}}}}{{Tab|Gene Product(s)|{{{1}}}}}{{Tab|Expression|{{{1}}}}}{{Tab|Evolution|{{{1}}}}}{{Tab|On One Page|{{{1}}}}}{{TabsBottom}}
{{Tab|Quickview|ythA}}{{Tab On|Gene|ythA}}{{Tab|Gene Product(s)|ythA}}{{Tab|Expression|ythA}}{{Tab|Evolution|ythA}}{{Tab|On One Page|ythA}}{{TabsBottom}}
{|
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"  
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"  
Line 17: Line 17:
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Sequence Features|Sequence Features]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Alleles and Phenotypes |Alleles and Phenotypes]]
|{{Sub}}[[#Genetic Interactions | Genetic Interactions]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Genetic Resources  |Genetic Resources]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
|{{Sub}}[[#Accessions in Other Databases |Accessions]]
Line 26: Line 27:
==Nomenclature==
==Nomenclature==
{{BacktoTop}}
{{BacktoTop}}
<protect><newTableEdit>Template:Gene_nomenclature_table</newTableEdit></protect>
<protect><protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.173514.U4c509e27ca09a-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Gene_nomenclature_help}}
{|  id="U4c509e27ca09a"  class=" tableEdit Gene_nomenclature_table" 
 
|-
!align=left {{table_heading_style}} |Standard name
||
ythA
|-
!align=left {{table_heading_style}} |Mnemonic
||
 
|-
!align=left {{table_heading_style}} |Synonyms
||
''b4655; ECK4434<ref name="LIB:Riley_2006" />, ECK4434, b4655''
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.173514.U4c509e27ca09a&page=173514&pagename={{FULLPAGENAMEE}}&type=1&template=Gene_nomenclature_table edit table]</span> ||
|}
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.173514.U4c509e27ca09a--></protect></protect>
===Notes===
===Notes===


Line 32: Line 58:
==Location(s) and DNA Sequence==
==Location(s) and DNA Sequence==
{{BacktoTop}}
{{BacktoTop}}
<protect><newTableEdit>Template:Gene_location_table</newTableEdit></protect>
<protect><protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.173514.Y4c509e27cb5e8-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Gene_location_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Y4c509e27cb5e8"  class=" tableEdit Gene_location_table" 
|- {{table_heading_style}}
!|Strain!!Map location!!Genome coordinates!!Genome browsers!!Sequence links
|-
|
[[MG1655]]
|
 
|
NC_000913: 4504471..4504596<br />{{GBrowseFigureByCoord|4504471|4504596|ecoli|NC_000913}}
|
{{GBrowseLink|MG1655|000913|4504471|NC_4504596|GBrowse (MG1655)}}
|
{{GBrowseFastaLink|MG1655|000913|4504471|NC_4504596|FASTA Dump}}
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.173514.Y4c509e27cb5e8&page=173514&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_location_table edit table]</span> || || || ||
|}
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.173514.Y4c509e27cb5e8--></protect></protect>
===Notes===
===Notes===


Line 38: Line 89:
==Sequence Features==
==Sequence Features==
{{BacktoTop}}
{{BacktoTop}}
<protect><newTableEdit>Template:Gene_sequence_features_table</newTableEdit></protect>
<protect><protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.173514.X4c509e27cc8b4-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Gene_sequence_features_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="X4c509e27cc8b4"  class=" tableEdit Gene_sequence_features_table" 
|- {{table_heading_style}}
!|Feature Type!!Strain!!Genomic Location!!Evidence!!Reference!!Notes
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.173514.X4c509e27cc8b4&page=173514&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_sequence_features_table edit table]</span> || || || || ||
|}
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.173514.X4c509e27cc8b4--></protect></protect>
====Notes====
====Notes====


Line 44: Line 109:
==Alleles and Phenotypes==
==Alleles and Phenotypes==
{{BacktoTop}}
{{BacktoTop}}
<protect><newTableEdit>Template:Gene_allele_table</newTableEdit></protect>
<protect><protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.173514.L4c509e27cdbbd-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Gene_alleles_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="L4c509e27cdbbd"  class=" tableEdit Gene_allele_table dataTable" 
|- {{table_heading_style}}
!|Allele!!Nt change(s)!!AA change(s)!!Phenotype: Type!!Phenotype: Description!!Reference!!Availability!!Comments
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.173514.L4c509e27cdbbd&page=173514&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_allele_table edit table]</span> || || || || || || ||
|}
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.173514.L4c509e27cdbbd--></protect></protect>
===Notes===
===Notes===


==Genetic Interactions==
{{BacktoTop}}
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.173514.J4e04cd201d41c-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Genetic_interaction_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="J4e04cd201d41c"  class=" tableEdit Genetic_interaction_table dataTable" 
|- {{table_heading_style}}
!|Interactor!!Interaction!!Allele!!Score(s)!!Reference(s)!!Accessions!!Notes
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.173514.J4e04cd201d41c&page=173514&pagename={{FULLPAGENAMEE}}&type=0&template=Genetic_interaction_table edit table]</span> || || || || || ||
|}
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.173514.J4e04cd201d41c--></protect>
<!-- Genetic Interacdtions Notes -->
===Notes===


==Genetic Resources==
==Genetic Resources==
{{BacktoTop}}
{{BacktoTop}}
<protect><newTableEdit>Template:Gene_resource_table</newTableEdit></protect>
<protect><protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.173514.L4c509e27ceda4-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Gene_resources_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="L4c509e27ceda4"  class=" tableEdit Gene_resource_table" 
|- {{table_heading_style}}
!|Resource!!Resource Type!!Source!!Notes/Reference
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.173514.L4c509e27ceda4&page=173514&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_resource_table edit table]</span> || || ||
|}
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.173514.L4c509e27ceda4--></protect></protect>
===Notes===
===Notes===


Line 56: Line 171:
==Accessions in Other Databases==
==Accessions in Other Databases==
{{BacktoTop}}
{{BacktoTop}}
<protect><newTableEdit>Template:Gene_accessions_table</newTableEdit></protect>
<protect><protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.173514.Z4c509e27cfe9d-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Gene_accessions_help}}
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Z4c509e27cfe9d"  class=" tableEdit Gene_accessions_table" 
|- {{table_heading_style}}
!|Database!!Accession!!Notes
|-
|
[[EcoCyc]]
|
EcoCyc:G0-10616
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG14464
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120033233
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[http://www.ncbi.nlm.nih.gov/gene NCBI] ([[NCBI|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/gene?term=5625581 GeneID:5625581]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[[EchoBASE]]
|
EchoBASE:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.173514.Z4c509e27cfe9d&page=173514&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
|}
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.173514.Z4c509e27cfe9d--></protect></protect>
===Notes===
===Notes===


Line 62: Line 233:
==Links==
==Links==
{{BacktoTop}}
{{BacktoTop}}
<protect><newTableEdit>Template:Links_table</newTableEdit></protect>
<protect><protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.173514.E4c509e27d1157-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="E4c509e27d1157"  class=" tableEdit Links_table" 
|- {{table_heading_style}}
!|Name!!URL!!Comments
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.173514.E4c509e27d1157&page=173514&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
|}
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.173514.E4c509e27d1157--></protect></protect>


</onlyinclude>
</onlyinclude>
Line 72: Line 257:


===Categories===
===Categories===
[[Category:Gene_List:MG1655]]

Latest revision as of 20:57, 19 September 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Location(s) and DNA Sequence Sequence Features Alleles and Phenotypes Genetic Interactions Genetic Resources Accessions Links References Suggestions

Nomenclature

[back to top]


<protect> See Help:Gene_nomenclature for help with entering information in the Gene Nomenclature table.

Standard name

ythA

Mnemonic
Synonyms

b4655; ECK4434[1], ECK4434, b4655

edit table

</protect>

Notes

Location(s) and DNA Sequence

[back to top]


<protect> See Help:Gene_location for help entering information in the Gene Location and DNA sequence table.

Strain Map location Genome coordinates Genome browsers Sequence links

MG1655

NC_000913: 4504471..4504596
gbrowse_img.php?coord=4504471..4504596&genome=ecoli&name=NC_000913&trackset=0&width=300&.png

edit table

</protect>

Notes

Sequence Features

[back to top]


<protect> See Help:Gene_sequence_features for help in entering sequence features in EcoliWiki.

Feature Type Strain Genomic Location Evidence Reference Notes
edit table

</protect>

Notes

Alleles and Phenotypes

[back to top]


<protect> See Help:Gene_alleles for how to enter or edit alleles and phenotypes in EcoliWiki.

Allele Nt change(s) AA change(s) Phenotype: Type Phenotype: Description Reference Availability Comments
edit table

</protect>

Notes

Genetic Interactions

[back to top]



Interactor Interaction Allele Score(s) Reference(s) Accessions Notes
edit table


Notes

Genetic Resources

[back to top]


<protect> See Help:Gene_resources for help entering information into the Genetic Resources table.

Resource Resource Type Source Notes/Reference
edit table

</protect>

Notes

Accessions in Other Databases

[back to top]


<protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:G0-10616

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG14464

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120033233

Escherichia coli str. K-12 substr. MG1655

NCBI (EcoliWiki Page)

GeneID:5625581

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:

Escherichia coli str. K-12 substr. MG1655

edit table

</protect>

Notes

Links

[back to top]


<protect>

</protect>


References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)

Categories

Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=ythA:Gene&oldid=1481674"