yoaK:Expression: Difference between revisions

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{{Tab|Quickview|{{{1}}}}}{{Tab|Gene|{{{1}}}}}{{Tab|Gene Product(s)|{{{1}}}}}{{Tab On|Expression|{{{1}}}}}{{Tab|Evolution|{{{1}}}}}{{Tab|On One Page|{{{1}}}}}{{TabsBottom}}
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==Intracellular Levels==
==Intracellular Levels==
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<protect><newTableEdit>Template:MoleculesPerCellTable</newTableEdit></protect>
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|- align='left' bgcolor='#CCCCFF'
!|Molecule!!Organism or Strain!!Value!!Units!!Experimental Conditions!!Assay used!!Notes!!Reference(s)
|-
|
Protein
|
''E. coli'' K-12 MG1655
|
277
|
molecules/cell/generation
|
*Medium: MOPS Complete 
* Temperature (°C):  37
*Doubling time (min):
* *Growth phase: 
*OD:
*other:
|
Ribosome Profiling
|
 
|
PMID: 24766808
|-
|
Protein
|
''E. coli'' K-12 MG1655
|
131
|
molecules/cell/generation
|
*Medium: MOPS Minimal 
* Temperature (°C):  37
*Doubling time (min):
* *Growth phase: 
*OD:
*other:
|
Ribosome Profiling
|
 
|
PMID: 24766808
|-
|
Protein
|
''E. coli'' K-12 MG1655
|
0<sup>a</sup>
 
|
molecules/cell/generation
|
*Medium: MOPS Complete without Methionine 
* Temperature (°C):  37
*Doubling time (min):
* *Growth phase: 
*OD:
*other:
|
Ribosome Profiling
|
Low confidence in the sequencing data set.
|
PMID: 24766808
 
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===Notes===
===Notes===


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==Translation and Regulation of Translation==
==Translation and Regulation of Translation==
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{{{GBrowse_Nterm_figure}}}
 
===Notes===
===Notes===


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===Mutations Affecting Expression===
===Mutations Affecting Expression===
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===Expression Studies===
===Expression Studies===
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===Expression Resources===
===Expression Resources===
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===Notes===
===Notes===




==Accessions Related to ''{{{1}}}'' Expression==
==Accessions Related to ''yoaK'' Expression==
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!|Database!!Accession!!Notes
|-
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[[EcoCyc]]
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EcoCyc:G0-10649
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[EcoGene]]
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EcoGene:EG14481
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[RegulonDB]]
|
RegulonDB:ECK120048861
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[EchoBASE]]
|
EchoBASE:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[ASAP]]
|
ASAP:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===


==Links==
==Links==
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Latest revision as of 20:02, 21 July 2015

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Overview Transcription Translation Turnover Experimental Links References Suggestions

Overview

Intracellular Levels

[back to top]


<protect> See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

E. coli K-12 MG1655

277

molecules/cell/generation

  • Medium: MOPS Complete
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID:24766808[1]

Protein

E. coli K-12 MG1655

131

molecules/cell/generation

  • Medium: MOPS Minimal
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

PMID:24766808[1]

Protein

E. coli K-12 MG1655

0a

molecules/cell/generation

  • Medium: MOPS Complete without Methionine
  • Temperature (°C): 37
  • Doubling time (min):
  • *Growth phase:
  • OD:
  • other:

Ribosome Profiling

Low confidence in the sequencing data set.

PMID:24766808[1]

edit table

</protect>

Notes

Transcription and Transcriptional Regulation

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<protect>

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)
edit table

|} </protect>

Notes

Translation and Regulation of Translation

[back to top]


Notes

Turnover and Regulation of Turnover

Notes

Experimental

[back to top]


Mutations Affecting Expression

<protect> See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
edit table

</protect>

Expression Studies

<protect> See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes
edit table

</protect>

Expression Resources

<protect> See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
edit table

Notes

Accessions Related to yoaK Expression

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<protect><protect> See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:G0-10649

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG14481

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120048861

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:

Escherichia coli str. K-12 substr. MG1655

edit table

</protect>

Notes

Links

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<protect>

</protect>


References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Li, GW et al. (2014) Quantifying absolute protein synthesis rates reveals principles underlying allocation of cellular resources. Cell 157 624-35 PubMed

Categories

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