trmI:Quickview: Difference between revisions

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{{Tab On|Quickview|trmI}}{{Tab|Gene|trmI}}{{Tab|Gene Product(s)|trmI}}{{Tab|Expression|trmI}}{{Tab|Evolution|trmI}}{{Tab|On One Page|trmI}}{{TabsBottom}}
{{Tab On|Quickview|trmI}}{{Tab|Gene|trmI}}{{Tab|Gene Product(s)|trmI}}{{Tab|Expression|trmI}}{{Tab|Evolution|trmI}}{{Tab|On One Page|trmI}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[trmI:Gene|''trmI]]'' (synonyms: ''yggH, ECK2955, b2960, JW2927, trmB'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/><ref name='LIB:EcoCyc10.6'/>
''trmI''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[trmI:Gene_Product(s)|YggH product]]<ref name='LIB:Riley_2006'/>: tRNA (m7G46) methyltransferase, SAM-dependent<ref name='LIB:Riley_2006'/>, B2960<ref name='LIB:EcoCyc10.6'/>, YggH<ref name='LIB:EcoCyc10.6'/>, TrmB<ref name='LIB:EcoCyc10.6'/>, TrmI<ref name='LIB:EcoCyc11.1'/>
''yggH, ECK2955, b2960, JW2927, trmB''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/><ref name='LIB:EcoCyc10.6'/>, trmB?''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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tRNA (m7G46) methyltransferase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
tRNA (m7G46) methyltransferase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


 
tRNA (m7G46) methyltransferase, SAM-dependent; monomeric<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''tRNA (m7G46) methyltransferase, SAM-dependent<ref name='LIB:Riley_2006'/>, B2960<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YggH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TrmB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TrmI<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/> , ECK2955, JW2927, trmB?, yggH, b2960''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:txn_units:yggL|yggL]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:yggL|yggL]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=trmI&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11779]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001713&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=trmI&loc=MG1655%3A3100874..3100155,W3110%3A3101508..3100789,DH10B%3A3195943..3195224,REL606%3A2987794..2988513,BW2952%3A2987303..2988022]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2987303&end=2988022&gene=trmI&aa=mkndvispefdengrplrrirsfvrrqgrltkgqehalenywpvmgvefsedmldfpalfgreapvtleigfgmgaslvamakdrpeqdflgievhspgvgaclasaheeglsnlrvmchdavevlhkmipdnslrmvqlffpdpwhkarhnkrrivqvpfaelvksklqlggvfhmatdwepyaehmlevmssidgyknlsesndyvprpasrpvtkfeqrghrlghgvwdlmfervk]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=trmI+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=trmI]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
{{BacktoTop}}
 
yggH is renamed trmI in Bjork and Hagervall's EcoSal Module 4.6.2. trmI is a non-essential gene. Although trmB was mapped to 6', trmI is at 66'; trmB may be regulator of the structural gene trmI, although it is also being used as a synonym of trmI(yggH). AFMB Structural Genomics target No. 128 (http://afmb.cnrs-mrs.fr/article171.html).<ref name='LIB:EcoGene'/>
 




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==References==
==References==
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Latest revision as of 21:45, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

trmI

Gene Synonym(s)

yggH, ECK2955, b2960, JW2927, trmB[1][2][3], trmB?

Product Desc.

tRNA (m7G46) methyltransferase[3][2]

tRNA (m7G46) methyltransferase, SAM-dependent; monomeric[4]

Product Synonyms(s)

tRNA (m7G46) methyltransferase, SAM-dependent[1], B2960[3][1], YggH[3][1], TrmB[3][1], TrmI[2][1] , ECK2955, JW2927, trmB?, yggH, b2960

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yggL[3]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


yggH is renamed trmI in Bjork and Hagervall's EcoSal Module 4.6.2. trmI is a non-essential gene. Although trmB was mapped to 6', trmI is at 66'; trmB may be regulator of the structural gene trmI, although it is also being used as a synonym of trmI(yggH). AFMB Structural Genomics target No. 128 (http://afmb.cnrs-mrs.fr/article171.html).[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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