EcoliWiki Reference Library: Difference between revisions
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===Brief Usage Notes=== | ===Brief Usage Notes=== | ||
<noinclude>Commonly used references can be listed here with a shortcut separated from the reference text by a "|" (vertical bar aka pipe) character. The shortcut should not have any spaces or start with a number. To use a reference like this, use | <noinclude>Commonly used references can be listed here with a shortcut separated from the reference text by a "|" (vertical bar aka pipe) character. The shortcut should not have any spaces or start with a number. To use a reference like this, use | ||
::<nowiki><ref name='LIB:shortcut/ | ::<nowiki><ref name='LIB:shortcut'/></nowiki> | ||
LIB tells EcoliWiki to look for the reference on this page. Leaving a blank line between references makes the list more readable, but is not required. | LIB tells EcoliWiki to look for the reference on this page. Leaving a blank line between references makes the list more readable, but is not required. | ||
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===EcoliWiki Reference Library List=== | ===EcoliWiki Reference Library List=== | ||
Bachmann1996|Derivations and genotypes of some mutant derivatives of ''Escherichia coli'' K-12. In: Neidhardt, FC et al. (1996) ''Escherichia coli'' and ''Salmonella typhimurium'': Cellular and Molecular Biology'' (ASM Press, Washington, DC) | Bachmann1996|Bachmann, B.J. Derivations and genotypes of some mutant derivatives of ''Escherichia coli'' K-12. In: Neidhardt, FC et al. (1996) ''Escherichia coli'' and ''Salmonella typhimurium'': Cellular and Molecular Biology'' (ASM Press, Washington, DC) | ||
Bacteriophages|Edited by Richard Calendar (2006) ''The Bacteriophages'' (Oxford University Press, Oxford, NY) ISBN 0-19-514850-9 | |||
BofV|Bruce A. Voles (2002) ''The Biology of Viruses'' (McGraw-Hill, Boston) ISBN 0-07-237031-9 | |||
CampbellPhage|Campbell, A.M. Bacteriophages. In: Neidhardt, FC et al. (1996) ''Escherichia coli'' and ''Salmonella typhimurium'': Cellular and Molecular Biology'' (ASM Press, Washington, DC) | |||
cgsc|[http://cgsc2.biology.yale.edu/index.php CGSC]: The Coli Genetics Stock Center | cgsc|[http://cgsc2.biology.yale.edu/index.php CGSC]: The Coli Genetics Stock Center | ||
ClowesHayes|Clowes, R.C. and W. Hayes (1968) ''Experiments in microbial genetics''. John Wiley & Sons, NY. | |||
EcoCyc10.6|[http://ecocyc.org/ EcoCyc] (release 10.6; 2007) Keseler, IM et al. (2005) ''Nucleic Acids Res.'' '''33'''(Database issue):D334-7 | EcoCyc10.6|[http://ecocyc.org/ EcoCyc] (release 10.6; 2007) Keseler, IM et al. (2005) ''Nucleic Acids Res.'' '''33'''(Database issue):D334-7 | ||
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EcoGene|[http://ecogene.org EcoGene]: Rudd, KE (2000) EcoGene: a genome sequence database for ''Escherichia coli'' K-12. ''Nucleic Acids Res'' '''28''':60-4. | EcoGene|[http://ecogene.org EcoGene]: Rudd, KE (2000) EcoGene: a genome sequence database for ''Escherichia coli'' K-12. ''Nucleic Acids Res'' '''28''':60-4. | ||
Lambda_I|Edited by A.D. Hershey (1971) ''The Bacteriophage Lambda'' (Cold Spring Harbor Laboratory, Cold Spring Harbor, NY) | |||
Lambda_II|Edited by Roger W. Hendrix, Jeffrey W. Roberts, Franklin W. Stahl and Robert A. Weisberg (1983) ''Lambda II'' (Cold Spring Harbor Laboratory, Cold Spring Harbor, NY) | |||
Maniatis|Sambrook, J and Russell DW (2001) ''Molecular Cloning: A Laboratory Manual'' (Cold Spring Harbor Laboratory, Cold Spring Harbor, NY) | Maniatis|Sambrook, J and Russell DW (2001) ''Molecular Cloning: A Laboratory Manual'' (Cold Spring Harbor Laboratory, Cold Spring Harbor, NY) | ||
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Miller1972|Miller, JH (1972) ''Experiments in Molecular Genetics'' (Cold Spring Harbor Laboratory, Cold Spring Harbor, NY) | Miller1972|Miller, JH (1972) ''Experiments in Molecular Genetics'' (Cold Spring Harbor Laboratory, Cold Spring Harbor, NY) | ||
Miller1992|Miller, JH (1992) ''A Short Course in Bacterial Genetics'' (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY) | |||
Neidhardt1996|Neidhardt, FC et al. (1996) ''Escherichia coli'' and ''Salmonella typhimurium'': Cellular and Molecular Biology'' (ASM Press, Washington, DC) | Mobile_DNA|Edited by Berg, Douglas E. and Martha Howe (1989) ''Mobile DNA'' (ASM Press, Washington, D.C) ISBN 1-55581-005-5 | ||
Mobile_DNA_II| Edited by Craig, Nancy L., Robert Craigie, Martin Gellert and Alan M. Lambowitz (2002) ''Mobile DNA II'' (ASM Press, Washington, D.C.) ISBN 1-55581-209-0 | |||
Mobile_Genetic_Elements|Shapiro, James A. (1983) ''Mobile Genetic Elements'' (Academic Press Inc, San Diego, CA ). ISBN 0-12-638680-3 | |||
Neidhardt et al. 1996|Neidhardt, FC et al. (1996) ''Escherichia coli'' and ''Salmonella typhimurium'': Cellular and Molecular Biology'' 2nd ed. (ASM Press, Washington, DC) | |||
Neidhardt1996|Neidhardt, FC et al. (1996) ''Escherichia coli'' and ''Salmonella typhimurium'': Cellular and Molecular Biology'' 2nd ed. (ASM Press, Washington, DC) | |||
Neidhardt1987|Neidhardt, FC et al. (1987) ''Escherichia coli'' and ''Salmonella typhimurium'': Cellular and Molecular Biology'' 1st ed. (ASM Press, Washington, DC) | |||
Nichols_linked_Tn|The Tn10 insertion sites determined by Nichols et al. 1998 ([[PMID:9829956]]) were reannotated by alignment with ''E. coli'' K-12 genome sequence (GenBank accession NC_000913). [[phage P1|P1]] [[Transduction|contransduction]] frequencies were calculated using the formula of Wu ([[PMID:5338813]]). | Nichols_linked_Tn|The Tn10 insertion sites determined by Nichols et al. 1998 ([[PMID:9829956]]) were reannotated by alignment with ''E. coli'' K-12 genome sequence (GenBank accession NC_000913). [[phage P1|P1]] [[Transduction|contransduction]] frequencies were calculated using the formula of Wu ([[PMID:5338813]]). | ||
Nichols phenomic profiles|Nichols, R.J., S. Sen, Y.J. Choo, P. Beltrao, M. Zietek, R. Chaba, S. Lee, K.M. Kazmierczak, K.J. Lee, A. Wong, M. Shales, S. Lovett, M.E. Winkler, N.J. Krogan, A. Typas, and C.A. Gross (2011) Phenotypic landscape of a bacterial cell. Cell 144 (1):143–156. | |||
RedBook|Ausubel, F et al. eds. (2007) ''Current Protocols in Molecular Biology'' Wiley. | RedBook|Ausubel, F et al. eds. (2007) ''Current Protocols in Molecular Biology'' Wiley. | ||
Riley_2006|Riley, M. et al. (2006) ''Nucleic Acids Res'' '''34''':1-6 (corrected supplemental data from B. Wanner) | Riley_2006|Riley, M. et al. (2006) ''Nucleic Acids Res'' '''34''':1-6 (corrected supplemental data from B. Wanner) | ||
Latest revision as of 02:23, 15 July 2015
Brief Usage Notes
Commonly used references can be listed here with a shortcut separated from the reference text by a "|" (vertical bar aka pipe) character. The shortcut should not have any spaces or start with a number. To use a reference like this, use
- <ref name='LIB:shortcut'/>
LIB tells EcoliWiki to look for the reference on this page. Leaving a blank line between references makes the list more readable, but is not required.
Please note that we don't need shortcuts for anything that is in PubMed, these can be done using
- <ref name='PMID:number'/>
See Help:References for more information about using references.
EcoliWiki Reference Library List
Bachmann1996|Bachmann, B.J. Derivations and genotypes of some mutant derivatives of Escherichia coli K-12. In: Neidhardt, FC et al. (1996) Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology (ASM Press, Washington, DC)
Bacteriophages|Edited by Richard Calendar (2006) The Bacteriophages (Oxford University Press, Oxford, NY) ISBN 0-19-514850-9
BofV|Bruce A. Voles (2002) The Biology of Viruses (McGraw-Hill, Boston) ISBN 0-07-237031-9
CampbellPhage|Campbell, A.M. Bacteriophages. In: Neidhardt, FC et al. (1996) Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology (ASM Press, Washington, DC)
cgsc|CGSC: The Coli Genetics Stock Center
ClowesHayes|Clowes, R.C. and W. Hayes (1968) Experiments in microbial genetics. John Wiley & Sons, NY.
EcoCyc10.6|EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
EcoCyc11.1|EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
EcoCyc12.5|EcoCyc (release 12.5; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
EcoCyc13.0|EcoCyc (release 13.0; 2009) Keseler, IM et al. (2009) Nucleic Acids Res. 37(Database issue):D464-70
EcoGene|EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
Lambda_I|Edited by A.D. Hershey (1971) The Bacteriophage Lambda (Cold Spring Harbor Laboratory, Cold Spring Harbor, NY)
Lambda_II|Edited by Roger W. Hendrix, Jeffrey W. Roberts, Franklin W. Stahl and Robert A. Weisberg (1983) Lambda II (Cold Spring Harbor Laboratory, Cold Spring Harbor, NY)
Maniatis|Sambrook, J and Russell DW (2001) Molecular Cloning: A Laboratory Manual (Cold Spring Harbor Laboratory, Cold Spring Harbor, NY)
Miller1972|Miller, JH (1972) Experiments in Molecular Genetics (Cold Spring Harbor Laboratory, Cold Spring Harbor, NY)
Miller1992|Miller, JH (1992) A Short Course in Bacterial Genetics (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY)
Mobile_DNA|Edited by Berg, Douglas E. and Martha Howe (1989) Mobile DNA (ASM Press, Washington, D.C) ISBN 1-55581-005-5
Mobile_DNA_II| Edited by Craig, Nancy L., Robert Craigie, Martin Gellert and Alan M. Lambowitz (2002) Mobile DNA II (ASM Press, Washington, D.C.) ISBN 1-55581-209-0
Mobile_Genetic_Elements|Shapiro, James A. (1983) Mobile Genetic Elements (Academic Press Inc, San Diego, CA ). ISBN 0-12-638680-3
Neidhardt et al. 1996|Neidhardt, FC et al. (1996) Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology 2nd ed. (ASM Press, Washington, DC)
Neidhardt1996|Neidhardt, FC et al. (1996) Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology 2nd ed. (ASM Press, Washington, DC)
Neidhardt1987|Neidhardt, FC et al. (1987) Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology 1st ed. (ASM Press, Washington, DC)
Nichols_linked_Tn|The Tn10 insertion sites determined by Nichols et al. 1998 (PMID:9829956) were reannotated by alignment with E. coli K-12 genome sequence (GenBank accession NC_000913). P1 contransduction frequencies were calculated using the formula of Wu (PMID:5338813).
Nichols phenomic profiles|Nichols, R.J., S. Sen, Y.J. Choo, P. Beltrao, M. Zietek, R. Chaba, S. Lee, K.M. Kazmierczak, K.J. Lee, A. Wong, M. Shales, S. Lovett, M.E. Winkler, N.J. Krogan, A. Typas, and C.A. Gross (2011) Phenotypic landscape of a bacterial cell. Cell 144 (1):143–156.
RedBook|Ausubel, F et al. eds. (2007) Current Protocols in Molecular Biology Wiley.
Riley_2006|Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)