bsmA:Quickview: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
touch QV table
touch
 
(6 intermediate revisions by 2 users not shown)
Line 23: Line 23:
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  
*  
****************************************************************************************** -->{{Quickview_table_help}}
****************************************************************************************** -->
{| id="U49b033978d078"  class=" tableEdit New_Quickview_Table"   
{|   id="U49b033978d078"  class=" tableEdit New_Quickview_Table"   


|-
|-
Line 33: Line 33:
!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
||
||
''ECK4185, b4189, JW5743'', yjfO<ref name='LIB:Riley_2006'/>
''ECK4185, b4189, JW5743'', yjfO<ref name='LIB:Riley_2006'/>, JW5743, yjfO''
|-
|-
!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
Line 43: Line 43:
!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
||
||
conserved protein product<ref name='LIB:Riley_2006'/>, B4189 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, BsmA product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''conserved protein<ref name='LIB:Riley_2006'/>, B4189<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, BsmA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK4185, JW5743, yjfO, b4189''
|-
|-
!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
Line 63: Line 63:
!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
||
||
[http://ecoliwiki.net/tools/display_dna.php?gene=yjfO&loc=MG1655:4414793..4414464,W3110:4421450..4421121,DH10B:4515155..4514826,REL606:4394925..4394596 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4394925&end=4394596&gene=yjfO&aa=mvsrkrnsviyrfaslllvlmlsacsalqgtpqpappvtdhpqeirrdqtqglqrigsvstmvrgspddalaeikakavaakadyyvvvmvdetivtgqwysqailyrk Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yjfO+AND+escherichia+coli Pubmed(yjfO)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/dev/search?q=yjfO Textpresso(yjfO)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yjfO&s=search]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yjfO&loc=MG1655%3A4414793..4414464,W3110%3A4421450..4421121,DH10B%3A4515155..4514826,REL606%3A4394925..4394596,BW2952%3A4353199..4353528]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4353199&end=4353528&gene=yjfO&aa=mvsrkrnsviyrfaslllvlmlsacsalqgtpqpappvtdhpqeirrdqtqglqrigsvstmvrgspddalaeikakavaakadyyvvvmvdetivtgqwysqailyrk]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yjfO+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yjfO]]&nbsp;&nbsp;


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  
Line 75: Line 75:


First 24 aa are a predicted type II signal peptide. YjfO is the only one of ten YhcN paralogs that is predicted to have a type II signal peptide; the others have type I signals predicted or verified.<ref name='LIB:EcoGene'/>
First 24 aa are a predicted type II signal peptide. YjfO is the only one of ten YhcN paralogs that is predicted to have a type II signal peptide; the others have type I signals predicted or verified.<ref name='LIB:EcoGene'/>
BsmA (YjfO) is a member of the [[YhcN_Family]] of paralogs.<ref name='PMID:9588799'/>






<noinclude>
<noinclude>
==References==
==References==
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 21:40, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

bsmA

Gene Synonym(s)

ECK4185, b4189, JW5743, yjfO[1], JW5743, yjfO

Product Desc.

conserved protein[2][3]

Function unknown lipoprotein, YhcN family, function unknown; Cys conserved[4]

Product Synonyms(s)

conserved protein[1], B4189[2][1], BsmA[2][1] , ECK4185, JW5743, yjfO, b4189

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): bsmA[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


First 24 aa are a predicted type II signal peptide. YjfO is the only one of ten YhcN paralogs that is predicted to have a type II signal peptide; the others have type I signals predicted or verified.[4]

BsmA (YjfO) is a member of the YhcN_Family of paralogs.[5]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Rudd, KE et al. (1998) Low molecular weight proteins: a challenge for post-genomic research. Electrophoresis 19 536-44 PubMed
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=bsmA:Quickview&oldid=1394305"