lpxC:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''lpxC''  
''lpxC''
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK0097, b0096, JW0094, asmB, envA''<ref name='LIB:Riley_2006'/>
''ECK0097, b0096, JW0094, asmB, envA''<ref name='LIB:Riley_2006'/>, envA''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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UDP-3-O-acyl N-acetylglucosamine deacetylase<ref name='LIB:Riley_2006'/>, B0096<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, EnvA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AsmB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, LpxC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''UDP-3-O-acyl N-acetylglucosamine deacetylase<ref name='LIB:Riley_2006'/>, B0096<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, EnvA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AsmB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, LpxC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , asmB, ECK0097, envA, JW0094, b0096''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
<GO_nr />
* GO:0019213 deacetylase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0009245 lipid A biosynthetic process ([http://www.geneontology.org/GO.evidence.shtml IMP])
 
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=lpxC&loc=MG1655:106557..107474,W3110:106557..107474,DH10B:80661..81578,REL606:109361..110278 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=109361&end=110278&gene=lpxC&aa=mikqrtlkrivqatgvglhtgkkvtltlrpapantgviyrrtdlnppvdfpadaksvrdtmlctclvnehdvristvehlnaalaglgidnivievnapeipimdgsaapfvyllldagidelncakkfvriketvrvedgdkwaefkpyngfsldftidfnhpaidssnqryamnfsadafmrqisrartfgfmrdieylqsrglclggsfdcaivvddyrvlnedglrfedefvrhkmldaigdlfmcghniigaftayksghalnnkllqavlakqeaweyvtfqddaelplafkapsavla Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=lpxC+AND+escherichia+coli Pubmed(lpxC)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=lpxC Textpresso(lpxC)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=lpxC&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10265]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000259&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=lpxC&loc=MG1655%3A106557..107474,W3110%3A106557..107474,DH10B%3A80661..81578,REL606%3A109361..110278,BW2952%3A106556..107473]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=106556&end=107473&gene=lpxC&aa=mikqrtlkrivqatgvglhtgkkvtltlrpapantgviyrrtdlnppvdfpadaksvrdtmlctclvnehdvristvehlnaalaglgidnivievnapeipimdgsaapfvyllldagidelncakkfvriketvrvedgdkwaefkpyngfsldftidfnhpaidssnqryamnfsadafmrqisrartfgfmrdieylqsrglclggsfdcaivvddyrvlnedglrfedefvrhkmldaigdlfmcghniigaftayksghalnnkllqavlakqeaweyvtfqddaelplafkapsavla]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=lpxC+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=lpxC]]&nbsp;&nbsp;


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Latest revision as of 21:48, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

lpxC

Gene Synonym(s)

ECK0097, b0096, JW0094, asmB, envA[1], envA

Product Desc.

UDP-3-O-acyl N-acetylglucosamine deacetylase Lipid A biosynthesis, UDP-3-O-(R-3-hydroxymyristoyl)-N-acetylglucosamine deacetylase; zinc metalloamidase; cell envelope and cell separation[2]

Product Synonyms(s)

UDP-3-O-acyl N-acetylglucosamine deacetylase[1], B0096[3][1], EnvA[3][1], AsmB[3][1], LpxC[3][1] , asmB, ECK0097, envA, JW0094, b0096

Function from GO

<GO_nr />

Knock-Out Phenotype

lethal (see PMID:2824434[4])

Regulation/Expression

transcription unit(s): lpxC[3]

Regulation/Activity

LPS biosynthesis

Quick Links



        

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Notes

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LpxC regulated degradation is facilitated by FtsH.[2]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  3. ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ Beall, B & Lutkenhaus, J (1987) Sequence analysis, transcriptional organization, and insertional mutagenesis of the envA gene of Escherichia coli. J. Bacteriol. 169 5408-15 PubMed
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