aaeR:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''aaeR''  
''aaeR''
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK3232, b3243, JW3212, yhcS, qseA''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''ECK3232, b3243, JW3212, yhcS, qseA''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, qseA''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted DNA-binding transcriptional regulator, efflux system<ref name='LIB:Riley_2006'/>, B3243<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhcS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AaeR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, QseA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''predicted DNA-binding transcriptional regulator, efflux system<ref name='LIB:Riley_2006'/>, B3243<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhcS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AaeR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, QseA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3232, JW3212, qseA, yhcS, b3243''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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'''Biological Process'''
'''Biological Process'''
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Regulation/Expression
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:aaeB|aaeB]]<ref name='LIB:EcoCyc10.6'/>
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!align=left {{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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transcription unit(s): [[:Category:Txn_unit:aaeR|aaeR]]<ref name='LIB:EcoCyc10.6'/>
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=aaeR&loc=MG1655:3387542..3388471,W3110:3389375..3390304,DH10B:3485287..3486216,REL606:3317417..3318346 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3317417&end=3318346&gene=aaeR&aa=merlkrmsvfakvvefgsftaaarqlqmsvssisqtvskledelqvkllnrstrsiglteagriyyqgcrrmlhevqdvheqlyafnntpigtlrigcsstmaqnvlagltakmlkeypglsvnlvtgipapdliadgldvvirvgalqdsslfsrrlgampmvvcaaksyltqygipekpadlsshswleysvrpdnefeliapegistrlipqgrfvtndpmtlvrwltagagiayvplmwvineinrgeleillpryqsdprpvyalytekdklplkvqvvinsltdyfvevgklfqemhgrgkek Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=aaeR+AND+escherichia+coli Pubmed(aaeR)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=aaeR Textpresso(aaeR)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=aaeR&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7688]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120004235&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=aaeR&loc=MG1655%3A3387542..3388471,W3110%3A3389375..3390304,DH10B%3A3485287..3486216,REL606%3A3317417..3318346,BW2952%3A3274690..3275619]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3274690&end=3275619&gene=aaeR&aa=merlkrmsvfakvvefgsftaaarqlqmsvssisqtvskledelqvkllnrstrsiglteagriyyqgcrrmlhevqdvheqlyafnntpigtlrigcsstmaqnvlagltakmlkeypglsvnlvtgipapdliadgldvvirvgalqdsslfsrrlgampmvvcaaksyltqygipekpadlsshswleysvrpdnefeliapegistrlipqgrfvtndpmtlvrwltagagiayvplmwvineinrgeleillpryqsdprpvyalytekdklplkvqvvinsltdyfvevgklfqemhgrgkek]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=aaeR+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=aaeR]]&nbsp;&nbsp;


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Latest revision as of 21:56, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

aaeR

Gene Synonym(s)

ECK3232, b3243, JW3212, yhcS, qseA[1][2], qseA

Product Desc.

quorum sensing transcriptional regulator of LYSR-type[2][3]

Transcriptional regulator for aaeXAB operon; activates ler in O157:H7[4]

Product Synonyms(s)

predicted DNA-binding transcriptional regulator, efflux system[1], B3243[2][1], YhcS[2][1], AaeR[2][1], QseA[2][1] , ECK3232, JW3212, qseA, yhcS, b3243

Function from GO

<GO_nr />

Knock-Out Phenotype

Biological Process

Molecular Function

Regulation/Expression
Regulation/Activity

transcription unit(s): aaeR[2]

Quick Links



        

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Notes

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LysR family. Activated by LuxS and AI-2 autoinducer in O157:H7.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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