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{{Tab On|Quickview|rnr}}{{Tab|Gene|rnr}}{{Tab|Gene Product(s)|rnr}}{{Tab|Expression|rnr}}{{Tab|Evolution|rnr}}{{Tab|On One Page|rnr}}{{TabsBottom}}
{{Tab On|Quickview|rnr}}{{Tab|Gene|rnr}}{{Tab|Gene Product(s)|rnr}}{{Tab|Expression|rnr}}{{Tab|Evolution|rnr}}{{Tab|On One Page|rnr}}{{TabsBottom}}
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{|   id="D49b0230897c4b"  class=" tableEdit New_Quickview_Table" 
 
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!align=left {{table_heading_style}} |Standard Name
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''rnr''
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!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK4175, b4179, JW5741, vacB, yjeC''<ref name='LIB:Riley_2006'/>, yjeC''
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Product Desc.
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[[rnr:Gene|''rnr]]'' (synonyms: ''ECK4175, b4179, JW5741, vacB, yjeC'')<ref name='LIB:Riley_2006'/>
EG11259-
Exoribonuclease R; specifically required for SsrA-SmpB-dependent decay of non-stop aberrant mRNAs (Richards, 2006)<ref name='LIB:EcoGene'/>
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Product Synonyms(s)
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[[rnr:Gene_Product(s)|Rnr product]]<ref name='LIB:Riley_2006'/>: exoribonuclease R, RNase R product, B4179 product, YjeC product, VacB product
''exoribonuclease R, RNase R<ref name='LIB:Riley_2006'/>, B4179<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YjeC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Rnr<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, VacB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK4175, JW5741, vacB, yjeC, b4179''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Function from GO
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EG11259-MONOMER<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
<GO_nr />
 
|-
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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|-
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:nsrR-rnr-rlmB|nsrR-rnr-rlmB]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:nsrR-rnr-rlmB|nsrR-rnr-rlmB]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=rnr&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11259]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001234&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=rnr&loc=MG1655%3A4404677..4407118,W3110%3A4411334..4413775,REL606%3A4384809..4387250,DH10B%3A4505039..4507480,BW2952%3A4343412..4345853]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4343412&end=4345853&gene=rnr&aa=mtkifirddnggtemsqdpfqereaekyanpipsrefilehltkrekpasrdelavelhiegeeqleglrrrlramerdgqlvftrrqcyalperldlvkgtvighrdgygflrvegrkddlylsseqmktcihgdqvlaqplgadrkgrrearivrvlvpktsqivgryfteagvgfvvpddsrlsfdilippdqimgarmgfvvvveltqrptrrtkavgkivevlgdnmgtgmavdialrtheipyiwpqaveqqvaglkeevpeeakagrvdlrdlplvtidgedardfddavycekkrgggwrlwvaiadvsyyvrpstpldrearnrgtsvyfpsqvipmlpevlsnglcslnpqvdrlcmvcemtvsskgrltgykfyeavmssharltytkvwhilqgdqdlreqyaplvkhleelhnlykvldkareerggisfeseeakfifnaerrierieqtqrndahklieecmilanisaarfvekakepalfrihdkpsteaitsfrsvlaelglelpggnkpeprdyaellesvadrpdaemlqtmllrsmkqaiydpenrghfglalqsyahftspirrypdltlhraikyllakeqghqgnttetggyhysmeemlqlgqhcsmaerradeatrdvadwlkcdfmldqvgnvfkgvissvtgfgffvrlddlfidglvhvssldndyyrfdqvgqrlmgessgqtyrlgdrvevrveavnmderkidfslisseraprnvgktarekakkgdagkkggkrrqvgkkvnfepdsafrgekktkpkaakkdarkakkpsaktqkiaaatkakraakkkvae]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rnr+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=rnr]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
{{BacktoTop}}
 
rnr is transiently induced after a cold shock. rnr is orthologous with Shigella virulence gene vacB.<ref name='LIB:EcoGene'/>
 




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==References==
==References==
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Latest revision as of 21:42, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

rnr

Gene Synonym(s)

ECK4175, b4179, JW5741, vacB, yjeC[1], yjeC

Product Desc.

EG11259- Exoribonuclease R; specifically required for SsrA-SmpB-dependent decay of non-stop aberrant mRNAs (Richards, 2006)[2]

Product Synonyms(s)

exoribonuclease R, RNase R[1], B4179[3][1], YjeC[3][1], Rnr[3][1], VacB[3][1] , ECK4175, JW5741, vacB, yjeC, b4179

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): nsrR-rnr-rlmB[3]

Regulation/Activity
Quick Links



        

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Notes

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rnr is transiently induced after a cold shock. rnr is orthologous with Shigella virulence gene vacB.[2]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  3. ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
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