Plasmid F traJ:Gene Product(s): Difference between revisions

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|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Localization |Localization]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Sequence|Sequence]]
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Structure|Structure]]
|{{Sub}}[[#Gene Product Resources|Resources]]
|{{Sub}}[[#Gene Product Resources|Resources]]
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</noinclude>
</noinclude>
==Nomenclature==
==Nomenclature==
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|-
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!{{table heading style}} |Standard name
!align=left {{table heading style}} |Standard name
|
||
traJ  
traJ  
|-
|-
!{{table heading style}} |Synonyms
!align=left {{table heading style}} |Synonyms
|
||
traJ, Fpla074  
traJ, Fpla074  
|-
|-
!{{table heading style}} |Product description
!align=left {{table heading style}} |Product description
|
||
traJ
traJ


this activator promotes transcription initiation upstream of the traY gene in the transfer operon  
this activator promotes transcription initiation upstream of the traY gene in the transfer operon  
|-
|-
!{{table heading style}} |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
|
||
 


|-
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<big>'''Gene Ontology'''</big>
<big>'''Gene Ontology'''</big>
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|- {{table_heading_style}}
|- {{table_heading_style}}
!Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-class='sortbottom'
|-
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|
 
|
GO:0005737
|
cytoplasm
|
PMID:3514611
|
IDA: Inferred from Direct Assay
|
 
|
C
|
 
|
complete
 
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{{Product_GO_help}}


<span id="Interactions"></span><big>'''Interactions'''</big>
<span id="Interactions"></span><big>'''Interactions '''</big>
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!|Partner Type!!Partner!!Notes!!References!!Evidence
 
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{{Product_interactions_help}}
<!--Function_notes-->
<!--Function_notes--></protect>
===Notes===
===Notes===




==Localization==
==Localization==
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!Compartment!!Description!!Evidence!!Notes
!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
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<span id="Sequence"></span><big>'''Physical Properties'''</big>
<span id="Sequence"></span><big>'''Physical Properties'''</big>
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{|{{Prettytable}}
{|   id="G4a48fd6e8f8c2"  class=" tableEdit Product_phys_prop_table" 
 
|-
!align=left {{table heading style}} |Name
||
 
|-
|-
!{{table heading style}} |Sequence
!align=left {{table heading style}} |Sequence
||
<pre>MYPMDRIQQK HARQIDLLEN LTAVIQDYPN PACIRDETGK FIFCNTLFHE SFLTQDQSAE
KWLLSQRDFC ELISVTEMEA YRNEHTHLNL VEDVFIQNRF WTISVQSFLN GHRNIILWQF
YDAAHVRHKD SYNQKTIVSD DIRNIIRRMS DDSSVSSYVN DVFYLYSTGI SHNAIARILN
ISISTSKKHA SLICDYFSVS NKDELIILLY NKKFIYYLYE KAMCIINTR</pre>
|-
|-
!{{table heading style}} |Mol. Wt
!align=left {{table heading style}} |Length
||
229
|-
|-
!{{table heading style}} |pI
!align=left {{table heading style}} |Mol. Wt
||
27.062 kDa
|-
|-
!{{table heading style}} |Extinction coefficient
!align=left {{table heading style}} |pI
||
6.9 (calculated)
|-
|-
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!align=left {{table heading style}} |Extinction coefficient
||
35,870 - 36,495 (calc based on 13 Y, 3 W, and 5 C residues)
 
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<big>'''Domains/Motifs/Modification Sites'''</big>
<span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span><table>
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!Type!!Residues!!Description!!Notes
!|Type!!Residues!!Description!!Notes!!References
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<td>
<!-- motifs column 2-->
<motif_map/>
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<span id="Structure"></span><big>'''Structure'''</big>
<table><tr valign='top'><td>
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<span id='Structure'></span><big>'''Structure'''</big><br />
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!Structure Type!!Organism!!Accession!!Residues covered!!Notes
|-
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!align=left {{table heading style}} |Structures
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||
<beststructure>
gene=Plasmid_F_traJ
taxon=2465
</beststructure>
|-
!align=left {{table heading style}} |Models
||
View models at:
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
 
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<!--Structure_notes--></protect>
</td><td></protect>
==== Structure figures ====
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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===Notes===
===Notes===


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==Gene Product Resources==
==Gene Product Resources==
{{BacktoTop}}
{{BacktoTop}}
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==Accessions in Other Databases==
==Accessions in Other Databases==
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[[EcoCyc]]
|
EcoCyc:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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==Links==
==Links==
{{BacktoTop}}
{{BacktoTop}}
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{{RefHelp}}
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<references/>
<references />
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 22:13, 17 February 2015

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

traJ

Synonyms

traJ, Fpla074

Product description

traJ

this activator promotes transcription initiation upstream of the traY gene in the transfer operon

EC number (for enzymes)


edit table

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Notes

Function

[back to top]


Gene Ontology See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005737

cytoplasm

PMID:3514611[1]

IDA: Inferred from Direct Assay

C

complete

edit table

See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Interactions

<protect> See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence
edit table


Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
edit table

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.


Notes

Structure and Physical Properties

[back to top]


Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence 
MYPMDRIQQK HARQIDLLEN LTAVIQDYPN PACIRDETGK FIFCNTLFHE SFLTQDQSAE
KWLLSQRDFC ELISVTEMEA YRNEHTHLNL VEDVFIQNRF WTISVQSFLN GHRNIILWQF
YDAAHVRHKD SYNQKTIVSD DIRNIIRRMS DDSSVSSYVN DVFYLYSTGI SHNAIARILN
ISISTSKKHA SLICDYFSVS NKDELIILLY NKKFIYYLYE KAMCIINTR
Length

229

Mol. Wt

27.062 kDa

pI

6.9 (calculated)

Extinction coefficient

35,870 - 36,495 (calc based on 13 Y, 3 W, and 5 C residues)

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Domains/Motifs/Modification Sites

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Type Residues Description Notes References
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<motif_map/>

Structure
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Structures

<beststructure> gene=Plasmid_F_traJ taxon=2465 </beststructure>

Models

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Structure figures

Notes

Gene Product Resources

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Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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Database Accession Notes

EcoCyc

EcoCyc:

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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  1. ↑ Cuozzo, M & Silverman, PM (1986) Characterization of the F plasmid TraJ protein synthesized in F' and Hfr strains of Escherichia coli K-12. J. Biol. Chem. 261 5175-9 PubMed

Categories

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