atpH:Gene Product(s): Difference between revisions

Standard name	AtpH
Synonyms	F1 sector of membrane-bound ATP synthase, delta subunit^[1], B3735^[2]^[1], Unc^[2]^[1], UncH^[2]^[1], PapE^[2]^[1], AtpH^[2]^[1] , ECK3728, JW3713, papE, uncH, b3735
Product description	ATP synthase, F1 complex, δ subunit^[2]^[3]; Component of ATP synthase, F1 complex^[2]^[3]; ATP synthase^[2]^[3] ATP synthase subunit delta, membrane-bound, F1 sector^[4]
EC number (for enzymes)	3.6.3.14^[1]
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0005886	plasma membrane	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000711	C	Seeded from EcoCyc (v14.0)	complete
	GO:0005886	plasma membrane	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR020781	C	Seeded from EcoCyc (v14.0)	complete
Contributes to	GO:0046933	hydrogen ion transporting ATP synthase activity, rotational mechanism	PMID:2863270^[5]	IDA: Inferred from Direct Assay		F		complete
	GO:0005886	plasma membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0997	C	Seeded from EcoCyc (v14.0)	complete
	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)	PMID:6294057^[6]	IMP: Inferred from Mutant Phenotype		C	Component of F1 complex, with gene products of uncA (alpha), uncD (beta), uncG (gamma) and uncC (epsilon) - for review see Chap 19 of Escherichia coli and Salmonella: Cellular and Molecular Biology, 2nd Edition.	complete
	GO:0005886	plasma membrane	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-1003	C	Seeded from EcoCyc (v14.0)	complete
	GO:0015986	ATP synthesis coupled proton transport	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000711	P	Seeded from EcoCyc (v14.0)	complete
	GO:0015986	ATP synthesis coupled proton transport	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR020781	P	Seeded from EcoCyc (v14.0)	complete
	GO:0016020	membrane	PMID:16858726^[7]	IDA: Inferred from Direct Assay		C	Seeded from EcoCyc (v14.0)	complete
	GO:0019898	extrinsic to membrane	GO_REF:0000023	IEA: Inferred from Electronic Annotation	SP_SL:SL-9903	C	Seeded from EcoCyc (v14.0)	complete
	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000711	C	Seeded from EcoCyc (v14.0)	complete
	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0139	C	Seeded from EcoCyc (v14.0)	complete
	GO:0046933	hydrogen ion transporting ATP synthase activity, rotational mechanism	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_01416	F	Seeded from EcoCyc (v14.0)	complete
	GO:0046933	hydrogen ion transporting ATP synthase activity, rotational mechanism	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000711	F	Seeded from EcoCyc (v14.0)	complete
	GO:0046933	hydrogen ion transporting ATP synthase activity, rotational mechanism	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR020781	F	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
Protein	Subunits of ATP synthase, F1 complex	could be indirect
Protein	iscS		PMID:16606699^[8]	Experiment(s):EBI-1146620
Protein	glpC		PMID:16606699^[8]	Experiment(s):EBI-1146620
Protein	atpA		PMID:16606699^[8]	Experiment(s):EBI-1146620
Protein	glpD		PMID:16606699^[8]	Experiment(s):EBI-1146620
Protein	yjjK		PMID:16606699^[8]	Experiment(s):EBI-1146620
Protein	dnaK		PMID:16606699^[8]	Experiment(s):EBI-1146620
Protein	atpD		PMID:16606699^[8]	Experiment(s):EBI-1146620
Protein	tyrR		PMID:19402753^[9]	LCMS(ID Probability):99.4
Protein	Subunits of ATP synthase	could be indirect
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
plasma membrane			From EcoCyc^[3]
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MSEFITVARP YAKAAFDFAV EHQSVERWQD MLAFAAEVTK NEQMAELLSG ALAPETLAES FIAVCGEQLD ENGQNLIRVM AENGRLNALP DVLEQFIHLR AVSEATAEVD VISAAALSEQ QLAKISAAME KRLSRKVKLN CKIDKSVMAG VIIRAGDMVI DGSVRGRLER LADVLQS
Length	177
Mol. Wt	19.331 kDa
pI	5.0 (calculated)
Extinction coefficient	6,990 - 7,240 (calc based on 1 Y, 1 W, and 2 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
Domain	7..175	PF00213 ATP synthase delta (OSCP) subunit		PMID:19920124^[10]
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=atpH taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16131603	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:948254	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0012215	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P0ABA4	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG10105	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10105	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:948254	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000101	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0103	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 ^1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 ^2.5 ^2.6 ^2.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 ^3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ Klionsky, DJ & Simoni, RD (1985) Assembly of a functional F1 of the proton-translocating ATPase of Escherichia coli. J. Biol. Chem. 260 11200-6 PubMed
↑ Humbert, R et al. (1983) Escherichia coli mutants defective in the uncH gene. J. Bacteriol. 153 416-22 PubMed
↑ Lasserre, JP et al. (2006) A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis. Electrophoresis 27 3306-21 PubMed
↑ ^8.0 ^8.1 ^8.2 ^8.3 ^8.4 ^8.5 ^8.6 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
↑ Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

atpH:Gene Product(s): Difference between revisions

Latest revision as of 21:07, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

@@ Line 35: / Line 35: @@
 *
 ****************************************************************************************** -->{{Product_nomenclature_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="A46aaffe6dc5ca"  class=" tableEdit Product_nomenclature_table"
 |-
@@ Line 44: / Line 44: @@
 !align=left {{table heading style}} |Synonyms
 ||
-F1 sector of membrane-bound ATP synthase, delta subunit<ref name='LIB:Riley_2006'/>, B3735<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Unc<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, UncH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PapE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AtpH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+''F1 sector of membrane-bound ATP synthase, delta subunit<ref name='LIB:Riley_2006'/>, B3735<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Unc<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, UncH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PapE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AtpH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3728, JW3713, papE, uncH, b3735''
 |-
 !align=left {{table heading style}} |Product description
@@ Line 58: / Line 58: @@
 * [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14]<ref name='LIB:Riley_2006'/>
-|-class='sortbottom'
+|- class="tableEdit_footer"
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+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28060.A46aaffe6dc5ca&page=28060&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28060.A46aaffe6dc5ca-->
@@ Line 77: / Line 77: @@
 *
 ****************************************************************************************** -->{{Product_GO_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Y46aaffe922e6f"  class=" tableEdit GO_table_product dataTable"
 |- {{table_heading_style}}
-!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
+!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
 |-
 |
 |
-GO:0016020
+GO:0005886
 |
-membrane
+plasma membrane
 |
-GO_REF:0000004
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0472
+InterPro:IPR000711
 |
 C
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 103: / Line 103: @@
 |
-GO:0006754
+GO:0005886
 |
-ATP biosynthetic process
+plasma membrane
 |
-GO_REF:0000004
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0066
+InterPro:IPR020781
 |
-P
+C
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
 |-
 |
+Contributes to
 |
-GO:0006810
+GO:0046933
 |
-transport
+hydrogen ion transporting ATP synthase activity, rotational mechanism
 |
-GO_REF:0000004
+PMID:2863270
 |
-IEA: Inferred from Electronic Annotation
+IDA: Inferred from Direct Assay
-|
-SP_KW:KW-0813
-|
-P
-|
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
-|
-complete
-|-
 |
-|
-GO:0006811
-|
-ion transport
-|
-GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-SP_KW:KW-0406
-|
-P
-|
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
-|
-complete
-|-
-|
-|
-GO:0015078
-|
-hydrogen ion transmembrane transporter activity
-|
-GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-SP_KW:KW-0375
 |
 F
-|
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
-|
-complete
-|-
 |
-|
-GO:0015986
-|
-ATP synthesis coupled proton transport
-|
-GO_REF:0000002
-|
-IEA: Inferred from Electronic Annotation
-|
-InterPro:IPR000711
-|
-P
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
 |
 complete
@@ Line 198: / Line 141: @@
 |
-GO:0015992
+GO:0005886
 |
-proton transport
+plasma membrane
-|
-GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-SP_KW:KW-0375
-|
-P
-|
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
-|
-complete
-|-
-|
-|
-GO:0046961
-|
-proton-transporting ATPase activity, rotational mechanism
-|
-GO_REF:0000002
-|
-IEA: Inferred from Electronic Annotation
-|
-InterPro:IPR000711
-|
-F
-|
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
-|
-complete
-|-
-|
-|
-GO:0016469
-|
-proton-transporting two-sector ATPase complex
 |
-GO_REF:0000002
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR000711
+SP_KW:KW-0997
 |
 C
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
-|
-complete
-|-
-|
-|
-GO:0016787
-|
-hydrolase activity
-|
-GO_REF:0000004
-|
-IEA: Inferred from Electronic Annotation
-|
-SP_KW:KW-0378
-|
-F
-|
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
 |
 complete
@@ Line 278: / Line 164: @@
 proton-transporting ATP synthase complex, catalytic core F(1)
 |
-GO_REF:0000004
+PMID:6294057
 |
-IEA: Inferred from Electronic Annotation
+IMP: Inferred from Mutant Phenotype
 |
-SP_KW:KW-0139
 |
 C
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Component of F1 complex, with gene products of uncA (alpha), uncD (beta), uncG (gamma) and uncC (epsilon) - for review see Chap 19 of Escherichia coli and Salmonella: Cellular and Molecular Biology, 2nd Edition.
 |
 complete
@@ Line 293: / Line 179: @@
 |
-GO:0046872
+GO:0005886
 |
-metal ion binding
+plasma membrane
 |
-GO_REF:0000004
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0066
+SP_KW:KW-1003
 |
-F
+C
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 312: / Line 198: @@
 |
-GO:0046933
+GO:0015986
 |
-hydrogen ion transporting ATP synthase activity, rotational mechanism
+ATP synthesis coupled proton transport
 |
-GO_REF:0000002
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
@@ Line 322: / Line 208: @@
 InterPro:IPR000711
 |
-F
+P
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
-|-
-|
-|
-GO:0005737
-|
-cytoplasm
-|
-|
-|
-|
-C
-|
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
-|
-required fields missing
 |-
 |
 |
-GO:0005886
+GO:0015986
 |
-plasma membrane
+ATP synthesis coupled proton transport
 |
-GO_REF:0000004<br />GO_REF:0000004<br />GO_REF:0000023
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0997<br />SP_KW:KW-1003<br />SP_SL:SL-0037
+InterPro:IPR020781
 |
-C
+P
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 369: / Line 236: @@
 |
-GO:0005886
+GO:0016020
 |
-plasma membrane
+membrane
 |
-GO_REF:0000004<br />GO_REF:0000004<br />GO_REF:0000023
+PMID:16858726
 |
-IEA: Inferred from Electronic Annotation
+IDA: Inferred from Direct Assay
 |
-SP_KW:KW-0997<br />SP_KW:KW-1003<br />SP_SL:SL-0037
 |
 C
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 388: / Line 255: @@
 |
-GO:0006754
+GO:0019898
 |
-ATP biosynthetic process
+extrinsic to membrane
 |
-GO_REF:0000004
+GO_REF:0000023
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0066
+SP_SL:SL-9903
 |
-P
+C
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 407: / Line 274: @@
 |
-GO:0006810
+GO:0045261
 |
-transport
+proton-transporting ATP synthase complex, catalytic core F(1)
 |
-GO_REF:0000004
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0813
+InterPro:IPR000711
 |
-P
+C
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 426: / Line 293: @@
 |
-GO:0006811
+GO:0045261
 |
-ion transport
+proton-transporting ATP synthase complex, catalytic core F(1)
 |
-GO_REF:0000004
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0406
+SP_KW:KW-0139
 |
-P
+C
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 445: / Line 312: @@
 |
-GO:0015078
+GO:0046933
 |
-hydrogen ion transmembrane transporter activity
+hydrogen ion transporting ATP synthase activity, rotational mechanism
 |
-GO_REF:0000004
+GOA:hamap<br />GO_REF:0000020
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0375
+HAMAP:MF_01416
 |
 F
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
-|
-complete
-|-
-|
-|
-GO:0015986
-|
-ATP synthesis coupled proton transport
-|
-GO_REF:0000002<br />PMID:6294057
-|
-IMP: Inferred from Mutant Phenotype
-|
-InterPro:IPR000711<br />
-|
-P
-|
-Seeded from EcoCyc
 |
 complete
@@ Line 482: / Line 330: @@
 |
-|
-GO:0015986
-|
-ATP synthesis coupled proton transport
-|
-PMID:6294057
-|
-IMP: Inferred from Mutant Phenotype
-|
-|
-P
-|
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
-|
-complete
-|-
-|
-Contributes to
 |
 GO:0046933
@@ Line 506: / Line 335: @@
 hydrogen ion transporting ATP synthase activity, rotational mechanism
 |
-PMID:2863270
+GOA:interpro<br />GO_REF:0000002
 |
-IDA: Inferred from Direct Assay
+IEA: Inferred from Electronic Annotation
 |
+InterPro:IPR000711
 |
 F
 |
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 521: / Line 350: @@
 |
-GO:0045261
+GO:0046933
 |
-proton-transporting ATP synthase complex, catalytic core F(1)
+hydrogen ion transporting ATP synthase activity, rotational mechanism
 |
-PMID:6294057
+GOA:interpro<br />GO_REF:0000002
-|
-IMP: Inferred from Mutant Phenotype
-|
-|
-C
-|
-Component of F1 complex, with gene products of uncA (alpha), uncD (beta), uncG (gamma) and uncC (epsilon) - for review see Chap 19 of Escherichia coli and Salmonella: Cellular and Molecular Biology, 2nd Edition.
-|
-complete
-|-
-|
-|
-GO:0015992
-|
-proton transport
-|
-GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0375
+InterPro:IPR020781
 |
-P
+F
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
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+|- class="tableEdit_footer"
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+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28060.Y46aaffe922e6f&page=28060&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table]</span> || || || || || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28060.Y46aaffe922e6f-->
@@ Line 569: / Line 379: @@
 *
 ****************************************************************************************** -->{{Product_interactions_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="M46aafffc01f46"  class=" tableEdit Product_interactions_table dataTable"
 |- {{table heading style}}
 !|Partner Type!!Partner!!Notes!!References!!Evidence
@@ Line 660: / Line 470: @@
 |
 Experiment(s):EBI-1146620<br />
+|-
+|
+Protein
+|
+tyrR
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.4
 |-
 |
@@ Line 672: / Line 493: @@
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28060.M46aafffc01f46&page=28060&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table] || || || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28060.M46aafffc01f46&page=28060&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28060.M46aafffc01f46-->
@@ Line 689: / Line 510: @@
 *
 ****************************************************************************************** -->{{Product_localization_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Q46aafffdd4c46"  class=" tableEdit Product_localization_table"
 |- {{table heading style}}
-!|Compartment!!Description!!Evidence!!Notes
+!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
 |-
 |
@@ Line 700: / Line 521: @@
 |
 From EcoCyc<ref name='LIB:EcoCyc11.1'/>
+|
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28060.Q46aafffdd4c46&page=28060&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || ||
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 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28060.Q46aafffdd4c46-->
@@ Line 723: / Line 546: @@
 *
 ****************************************************************************************** -->{{Product_physical_properties_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="U46ab000045f4c"  class=" tableEdit Product_phys_prop_table"
+|-
+!align=left {{table heading style}} |Name
+||
 |-
@@ Line 739: / Line 566: @@
 !align=left {{table heading style}} |Mol. Wt
 ||
-.33 kDa (calc) <ref name='LIB:EcoCyc10.6'/>
+.331 kDa
 |-
 !align=left {{table heading style}} |pI
 ||
-.11<ref name='LIB:EcoCyc10.6'/>
+.0 (calculated)
 |-
 !align=left {{table heading style}} |Extinction coefficient
 ||
-- 7240 (calc based on 1 Y, 1 W, and 2 C residues)
+,990 - 7,240 (calc based on 1 Y, 1 W, and 2 C residues)
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28060.U46ab000045f4c&page=28060&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28060.U46ab000045f4c&page=28060&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28060.U46ab000045f4c-->
@@ Line 764: / Line 591: @@
 *
 ****************************************************************************************** -->{{Product_domains_motifs_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="B46ab0000c031a"  class=" tableEdit Product_motif_table dataTable"
 |- {{table heading style}}
-!|Type!!Residues!!Description!!Notes
+!|Type!!Residues!!Description!!Notes!!References
+|-
+|
+Domain
+|
+..175
+|
+[http://pfam.janelia.org/family/PF00213 PF00213  ATP synthase delta (OSCP) subunit]
+|
+|
+PMID:19920124
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28060.B46ab0000c031a&page=28060&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28060.B46ab0000c031a&page=28060&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28060.B46ab0000c031a--></td>
@@ Line 780: / Line 618: @@
 </table>
-<span id="Structure"></span><big>'''Structure'''</big>
+<table><tr valign='top'><td>
+<span id='Structure'></span><big>'''Structure'''</big><br />
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28060.H46ab00012fad0-->
 <!--
@@ Line 788: / Line 627: @@
 *
 ****************************************************************************************** -->{{Product_structure_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="H46ab00012fad0"  class=" tableEdit Product_structure_table"
 |-
 !align=left {{table heading style}} |Structures
 ||
-<beststructure>atpH
+<beststructure>
-</beststructure>
+gene=atpH
+taxon=562,83333
+</beststructure>
 |-
 !align=left {{table heading style}} |Models
 ||
 View models at:
-* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=atpH&sub=keywordSearc EcoliPredict]
+* [http://www.proteinmodelportal.org/query/uniprot/P0ABA4 Protein Model Portal]
-* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=atpH&organism=562&organismtext= ModBase]
+* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P0ABA4 PSI-PRED (P0ABA4)]
-* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
+* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P0ABA4 Genomes TO Protein (P0ABA4)] (GTOP)
-* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
-* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28060.H46ab00012fad0&page=28060&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
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 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28060.H46ab00012fad0-->
-<!--Structure_notes--></protect>
+</td><td></protect>
+==== Structure figures ====
+<protect><!--          ***** PLEASE DO NOT EDIT BELOW THIS LINE *****         -->
+</td><tr><table><!--Structure_notes--></protect>
 ===Notes===
@@ Line 825: / Line 683: @@
 *
 ****************************************************************************************** -->{{Product_resources_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="H46ab00022260a"  class=" tableEdit Product_resource_table"
 |- {{table_heading_style}}
 !|Resource type!!Source!!Notes/Reference
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28060.H46ab00022260a&page=28060&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.28060.H46ab00022260a&page=28060&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28060.H46ab00022260a-->
@@ Line 847: / Line 705: @@
 *
 ****************************************************************************************** -->{{Gene_accessions_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="U46ab00028c38b"  class=" tableEdit Gene_accessions_table"
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |-
 |
-[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/16131603 GI:16131603]
 |
-[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=ATPH-MONOMER EcoCyc:ATPH-MONOMER]
+Escherichia coli str. K-12 substr. MG1655
+|-
 |
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/NP_418191.1 GeneID:948254]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[ASAP]]
+|
+ASAP:ABE-0012215
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+|
+[http://www.uniprot.org/uniprot/P0ABA4 UniProtKB/Swiss-Prot:P0ABA4]
+|
+Escherichia coli str. K-12 substr. MG1655
 |-
 |
-[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+[[EcoCyc]]
 |
-[[uniprot:P0ABA4|UniProt:P0ABA4]]
+EcoCyc:EG10105
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
+[[EcoGene]]
 |
-[http://pfam.sanger.ac.uk/family?acc=PF00213 PFAM:PF00213]
+EcoGene:EG10105
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
 |
-[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_418191 RefSeq:NP_418191]
+[http://www.ncbi.nlm.nih.gov/gene?term=948254 GeneID:948254]
 |
+Escherichia coli str. K-12 substr. MG1655
 |-
 |
-[http://modbase.compbio.ucsf.edu ModBase] ([[ModBase|EcoliWiki Page]])
+[[RegulonDB]]
 |
-[http://salilab.org/modbase/searchbyid?databaseID=P0ABA4 ModBase:P0ABA4]
+RegulonDB:ECK120000101
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://www.rcsb.org/pdb PDB] ([[PDB|EcoliWiki Page]])
+[[EchoBASE]]
 |
-[http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=1ABV PDB:1ABV]
+EchoBASE:EB0103
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
-|-class='sortbottom'
+|- class="tableEdit_footer"
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 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28060.U46ab00028c38b-->
@@ Line 911: / Line 790: @@
 *
 ****************************************************************************************** -->
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="L46a88b3a9fb7e"  class=" tableEdit Links_table"
 |- {{table_heading_style}}
 !|Name!!URL!!Comments
-|-class='sortbottom'
+|- class="tableEdit_footer"
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 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.28060.L46a88b3a9fb7e-->
@@ Line 926: / Line 805: @@
 ==References==
 {{BacktoTop}}
+{{RefHelp}}
-<references/>
+<references />
 __NOTOC__
-</noinclude>
 ===Categories===
 {{BacktoTop}}
 [[Category:Proteins]]
-[[Category:GO:0005737_!_cytoplasm]][[Category:GO:0015986_!_ATP synthesis coupled proton transport]][[Category:GO:0016471_!_vacuolar proton-transporting V-type ATPase complex]][[Category:Complex:ATP synthase, F1 complex]][[Category:Complex:ATP synthase]][[Category:Location:cytoplasm]][[Category:Location:plasma membrane]][[Category:Products with structures in PDB]]
+[[Category:RefGenome_Annotated_Gene]]

atpH:Gene Product(s): Difference between revisions

Latest revision as of 21:07, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

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