eutS:Gene Product(s): Difference between revisions

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!align=left {{table heading style}} |Synonyms
!align=left {{table heading style}} |Synonyms
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predicted carboxysome structural protein with predicted role in ethanol utilization<ref name='LIB:Riley_2006'/>, B2462<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YpfE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, EutS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''predicted carboxysome structural protein with predicted role in ethanol utilization<ref name='LIB:Riley_2006'/>, B2462<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YpfE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, EutS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2457, JW2446, ypfE, b2462''
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!align=left {{table heading style}} |Product description
!align=left {{table heading style}} |Product description
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!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
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!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence
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!|Compartment!!Description!!Evidence!!Source!!Notes
!|Compartment!!Description!!Evidence!!Reference/Source!!Notes


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!align=left {{table heading style}} |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
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5,960 - 6,085 (calc based on 4 Y, W, and 1 C residues)
5,960 - 6,085 (calc based on 4 Y, 0 W, and 1 C residues)


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!|Type!!Residues!!Description!!Notes!!References
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View models at:
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=recA EcoliPredict]
* [http://www.proteinmodelportal.org/query/uniprot/P63746 Protein Model Portal]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=recA&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P63746 PSI-PRED (P63746)]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P63746 Genomes TO Protein (P63746)] (GTOP)
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)


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!|Resource type!!Source!!Notes/Reference
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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
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[http://www.ncbi.nlm.nih.gov/protein/90111440 GI:90111440]
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Escherichia coli str. K-12 substr. MG1655
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[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
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[http://www.ncbi.nlm.nih.gov/protein/NP_416957.4 GeneID:946936]
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Escherichia coli str. K-12 substr. MG1655
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[[ASAP]]
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7292-MONOMER EcoCyc:G7292-MONOMER]
ASAP:ABE-0008108
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
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[http://www.uniprot.org/uniprot/P63746 UniProtKB/Swiss-Prot:P63746]
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Escherichia coli str. K-12 substr. MG1655
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[[EcoCyc]]
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EcoCyc:G7292
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG14192
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
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[[uniprot:P63746|UniProt:P63746]]
[http://www.ncbi.nlm.nih.gov/gene?term=946936 GeneID:946936]
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Escherichia coli str. K-12 substr. MG1655
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[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
[[RegulonDB]]
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[http://pfam.janelia.org/protein/P63746 Pfam:P63746]
RegulonDB:ECK120003866
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
[[EchoBASE]]
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[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_416957 RefSeq:NP_416957]
EchoBASE:EB3944
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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!|Name!!URL!!Comments
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Latest revision as of 20:51, 17 February 2015

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YpfE

Synonyms

predicted carboxysome structural protein with predicted role in ethanol utilization[1], B2462[2][1], YpfE[2][1], EutS[2][1] , ECK2457, JW2446, ypfE, b2462

Product description

predicted carboxysome structural protein with predicted role in ethanolamine utilization[2][3]

Ethanolamine catabolic microcompartment shell protein[4]

EC number (for enzymes)


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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005198

structural molecule activity

PMID:20044574[5]

ISS: Inferred from Sequence or Structural Similarity

UniProtKB:Q9ZFV7

F

Seeded from EcoCyc (v14.0)

complete

GO:0006580

ethanolamine metabolic process

GOA:interpro
GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR009307

P

Seeded from EcoCyc (v14.0)

complete

GO:0031471

ethanolamine degradation polyhedral organelle

PMID:20044574[5]

ISS: Inferred from Sequence or Structural Similarity

UniProtKB:Q9ZFV7

C

Seeded from EcoCyc (v14.0)

complete

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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

Q79BD2

PMID:16606699[6]

Experiment(s):EBI-1142911

Protein

yhjB

PMID:16606699[6]

Experiment(s):EBI-1142911

Protein

phnN

PMID:16606699[6]

Experiment(s):EBI-1142911

Protein

ybhS

PMID:16606699[6]

Experiment(s):EBI-1142911

Protein

sfmC

PMID:16606699[6]

Experiment(s):EBI-1142911

Protein

greB

PMID:16606699[6]

Experiment(s):EBI-1142911

Protein

rplD

PMID:16606699[6]

Experiment(s):EBI-1142911

Protein

alpA

PMID:16606699[6]

Experiment(s):EBI-1142911
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MPNFVIYSDE KLSRYTKVFH RRRLMDKERI IQEFVPGKQV TLAHLIAHPG EELAKKIGVP
DAGAIGIMTL TPGETAMIAG DLALKAADVH IGFLDRFSGA LVIYGSVGAV EEALSQTVSG
LGRLLNYTLC EMTKS
Length

135

Mol. Wt

14.688 kDa

pI

7.5 (calculated)

Extinction coefficient

5,960 - 6,085 (calc based on 4 Y, 0 W, and 1 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References

Domain

39..109

PF00936 BMC domain

PMID:19920124[7]

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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=eutS taxon=562,83333 </beststructure>

Models

View models at:

edit table

Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

NCBI (Protein) (EcoliWiki Page)

GI:90111440

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:946936

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008108

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P63746

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G7292

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG14192

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:946936

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003866

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3944

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Tanaka, S et al. (2010) Structure and mechanisms of a protein-based organelle in Escherichia coli. Science 327 81-4 PubMed
  6. ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
  7. ↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

Categories

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