yffL:Gene Product(s): Difference between revisions
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|{{Sub}}[[#Localization |Localization]] | |{{Sub}}[[#Localization |Localization]] | ||
|{{Sub}}[[#Sequence|Sequence]] | |{{Sub}}[[#Sequence|Sequence]] | ||
|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]] | |||
|{{Sub}}[[#Structure|Structure]] | |{{Sub}}[[#Structure|Structure]] | ||
|{{Sub}}[[#Gene Product Resources|Resources]] | |{{Sub}}[[#Gene Product Resources|Resources]] | ||
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!{{table heading style}} |Standard name | !align=left {{table heading style}} |Standard name | ||
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YffL | YffL | ||
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!{{table heading style}} |Synonyms | !align=left {{table heading style}} |Synonyms | ||
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CPZ-55 prophage; predicted protein | ''CPZ-55 prophage; predicted protein<ref name='LIB:Riley_2006'/>, B2443<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YffL<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2438, b2443'' | ||
|- | |- | ||
!{{table heading style}} |Product description | !align=left {{table heading style}} |Product description | ||
| | || | ||
CPZ-55 prophage; predicted protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | CPZ-55 prophage; predicted protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
Function unknown, Eut/CPZ-55 prophage<ref name='LIB:EcoGene'/> | |||
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!{{table heading style}} |EC number (for enzymes) | !align=left {{table heading style}} |EC number (for enzymes) | ||
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===Notes=== | ===Notes=== | ||
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{{BacktoTop}} | {{BacktoTop}} | ||
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<big>'''Gene Ontology'''</big><br /> | <big>'''Gene Ontology'''</big><br /><!--box uid=421aa90e079fa326b6494f812ad13e79.25126.R46aaa81e2ce8d--> | ||
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{| | {| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="R46aaa81e2ce8d" class=" tableEdit GO_table_product dataTable" | ||
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!Qualifier!!GO ID!!GO term name!!Reference | !|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status | ||
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|- {{table heading style}} | |- {{table heading style}} | ||
!Partner Type!!Partner!!Notes | !|Partner Type!!Partner!!Notes!!References!!Evidence | ||
|-class= | |- | ||
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Protein | |||
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rpsT | |||
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PMID:19402753 | |||
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LCMS(ID Probability):99.6 | |||
|- | |||
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Protein | |||
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groS | |||
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PMID:19402753 | |||
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LCMS(ID Probability):99.6 | |||
|- | |||
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Protein | |||
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rplM | |||
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PMID:19402753 | |||
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LCMS(ID Probability):99.6 | |||
|- | |||
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Protein | |||
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rpmB | |||
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PMID:19402753 | |||
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LCMS(ID Probability):99.6 | |||
|- | |||
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Protein | |||
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rpsM | |||
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PMID:19402753 | |||
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LCMS(ID Probability):99.6 | |||
|- | |||
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Protein | |||
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rplT | |||
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PMID:19402753 | |||
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LCMS(ID Probability):99.6 | |||
|- | |||
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Protein | |||
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rplU | |||
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PMID:19402753 | |||
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LCMS(ID Probability):99.6 | |||
|- | |||
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Protein | |||
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fadJ | |||
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PMID:19402753 | |||
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MALDI(Z-score):28.803616 | |||
|- | |||
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Protein | |||
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fadI | |||
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PMID:19402753 | |||
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MALDI(Z-score):39.194124 | |||
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===Notes=== | ===Notes=== | ||
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!align=left {{table heading style}} |Name | |||
|| | |||
|- | |- | ||
!{{table heading style}} |Sequence | !align=left {{table heading style}} |Sequence | ||
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[http://biocyc.org/ECOLI/sequence-aa?object=G7273-MONOMER at EcoCyc] | [http://biocyc.org/ECOLI/sequence-aa?object=G7273-MONOMER at EcoCyc] | ||
<pre>MFATKDPEFE NRINTNKSPR NAATCRGRYE KQAKGEFLMS DMLAVEQETN NDVRQFLNKI | <pre>MFATKDPEFE NRINTNKSPR NAATCRGRYE KQAKGEFLMS DMLAVEQETN NDVRQFLNKI | ||
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HFKLVERTEG YIPGSAEREC NEYQLLFKPY NMK</pre> | HFKLVERTEG YIPGSAEREC NEYQLLFKPY NMK</pre> | ||
|- | |- | ||
!{{table heading style}} | | !align=left {{table heading style}} |Length | ||
| | || | ||
213 | |||
|- | |- | ||
!{{table heading style}} | | !align=left {{table heading style}} |Mol. Wt | ||
| | || | ||
25.143 kDa | |||
|- | |- | ||
!{{table heading style}} | | !align=left {{table heading style}} |pI | ||
| | || | ||
8.4 (calculated) | |||
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| | !align=left {{table heading style}} |Extinction coefficient | ||
|| | |||
26,930 - 27,555 (calc based on 7 Y, 3 W, and 5 C residues) | |||
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= | |||
<!--box uid=421aa90e079fa326b6494f812ad13e79.25126.O46aaa82113659--> | <span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span><table> | ||
<tr align="left" valign="top"> | |||
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!Type!!Residues!!Description!!Notes | !|Type!!Residues!!Description!!Notes!!References | ||
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<!-- motifs column 2--> | |||
<motif_map/> | |||
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<span id='Structure'></span><big>'''Structure'''</big><br /> | |||
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!align=left {{table heading style}} |Structures | !align=left {{table heading style}} |Structures | ||
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<beststructure>yffL | <beststructure> | ||
562</beststructure> | gene=yffL | ||
taxon=562,83333 | |||
</beststructure> | |||
|- | |- | ||
!align=left {{table heading style}} |Models | !align=left {{table heading style}} |Models | ||
|| | || | ||
View models at: | View models at: | ||
* [http:// | * [http://www.proteinmodelportal.org/query/uniprot/P76543 Protein Model Portal] | ||
* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P76543 PSI-PRED (P76543)] | |||
* [http://bioinf.cs.ucl.ac.uk/ | * [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P76543 Genomes TO Protein (P76543)] (GTOP) | ||
* [http://spock.genes.nig.ac.jp/~genome/ | |||
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==== Structure figures ==== | |||
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===Notes=== | ===Notes=== | ||
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===Notes=== | ===Notes=== | ||
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!Database!!Accession!!Notes | !|Database!!Accession!!Notes | ||
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[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]]) | |||
| | |||
[http://www.ncbi.nlm.nih.gov/protein/16130368 GI:16130368] | |||
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Escherichia coli str. K-12 substr. MG1655 | |||
|- | |||
| | |||
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]]) | |||
| | |||
[http://www.ncbi.nlm.nih.gov/protein/NP_416938.1 GeneID:946922] | |||
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Escherichia coli str. K-12 substr. MG1655 | |||
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[[ASAP]] | |||
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ASAP:ABE-0008055 | |||
| | |||
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] | |||
|- | |||
| | |||
[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]]) | |||
| | |||
[http://www.uniprot.org/uniprot/P76543 UniProtKB/Swiss-Prot:P76543] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |||
| | |||
[[EcoCyc]] | |||
| | |||
EcoCyc:G7273 | |||
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] | |||
|- | |||
| | |||
[[EcoGene]] | |||
| | |||
EcoGene:EG14173 | |||
| | |||
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] | |||
|- | |||
| | | | ||
[http:// | [http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]]) | ||
| | | | ||
[http:// | [http://www.ncbi.nlm.nih.gov/gene?term=946922 GeneID:946922] | ||
| | | | ||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |- | ||
| | | | ||
[[RegulonDB]] | |||
| | | | ||
RegulonDB:ECK120003847 | |||
| | | | ||
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] | |||
|- | |- | ||
| | | | ||
[[EchoBASE]] | |||
| | | | ||
EchoBASE:EB3925 | |||
| | | | ||
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] | |||
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{{BacktoTop}} | {{BacktoTop}} | ||
{{RefHelp}} | {{RefHelp}} | ||
<references/> | <references /> | ||
__NOTOC__ | __NOTOC__ | ||
===Categories=== | ===Categories=== | ||
{{BacktoTop}} | {{BacktoTop}} | ||
[[Category:Proteins]] | |||
Latest revision as of 20:51, 17 February 2015
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
YffL |
|---|---|
| Synonyms |
CPZ-55 prophage; predicted protein[1], B2443[2][1], YffL[2][1] , ECK2438, b2443 |
| Product description |
CPZ-55 prophage; predicted protein[2][3] Function unknown, Eut/CPZ-55 prophage[4] |
| EC number (for enzymes) |
|
| edit table |
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
rpsT |
LCMS(ID Probability):99.6 | ||
|
Protein |
groS |
LCMS(ID Probability):99.6 | ||
|
Protein |
rplM |
LCMS(ID Probability):99.6 | ||
|
Protein |
rpmB |
LCMS(ID Probability):99.6 | ||
|
Protein |
rpsM |
LCMS(ID Probability):99.6 | ||
|
Protein |
rplT |
LCMS(ID Probability):99.6 | ||
|
Protein |
rplU |
LCMS(ID Probability):99.6 | ||
|
Protein |
fadJ |
MALDI(Z-score):28.803616 | ||
|
Protein |
fadI |
MALDI(Z-score):39.194124 | ||
| edit table |
Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
| edit table |
Notes
Structure and Physical Properties
Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MFATKDPEFE NRINTNKSPR NAATCRGRYE KQAKGEFLMS DMLAVEQETN NDVRQFLNKI NELRNKAPKN EETKHEEHTP DNHEETDHHE AKQQEQAWRG NLRYLDTLNR LDEVLPRKLY ERWEKEHTVN DEAVLRALCY FAGTGKNSQL GWCRVGRGTI DKRARLSKNT VKKCLDRLVN HFKLVERTEG YIPGSAEREC NEYQLLFKPY NMK |
| Length |
213 |
| Mol. Wt |
25.143 kDa |
| pI |
8.4 (calculated) |
| Extinction coefficient |
26,930 - 27,555 (calc based on 7 Y, 3 W, and 5 C residues) |
| edit table |
Domains/Motifs/Modification Sites
|
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
|
<motif_map/> |
|
Structure
|
Structure figures
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.8 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
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