dsdC:Gene Product(s): Difference between revisions

Standard name	DsdC
Synonyms	DNA-binding transcriptional dual regulator^[1], B2364^[2]^[1], DsdC^[2]^[1], D-serine dehydratase (deaminase) transcriptional activator^[2]^[1] , ECK2360, JW2361, b2364
Product description	DsdC transcriptional dual regulator^[2]^[3] Activator of dsdA transcription^[4]
EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0003677	DNA binding	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0238	F	Seeded from EcoCyc (v14.0)	complete
	GO:0003700	transcription factor activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000847	F	Seeded from EcoCyc (v14.0)	complete
	GO:0006350	transcription	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0804	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006355	regulation of transcription, DNA-dependent	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR000847	P	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	References	Evidence
Protein	yghA	PMID:16606699^[5]	Experiment(s):EBI-1142650
Protein	rmlA2	PMID:16606699^[5]	Experiment(s):EBI-1142650
Protein	yfeT	PMID:16606699^[5]	Experiment(s):EBI-1142650
Protein	groL	PMID:16606699^[5]	Experiment(s):EBI-1142650
Protein	rplO	PMID:16606699^[5]	Experiment(s):EBI-1142650
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MEPLREIRNR LLNGWQLSKM HTFEVAARHQ SFALAAEELS LSPSAVSHRI NQLEEELGIQ LFVRSHRKVE LTHEGKRVYW ALKSSLDTLN QEILDIKNQE LSGTLTLYSR PSIAQCWLVP ALGDFTRRYP SISLTVLTGN DNVNLQRAGI DLAIYFDDAP SAQLTHHFLM DEEILPVCSP EYAQRHALTN TVINLCHCTL LHDRQAWSND SGTDEWHSWA QHYAVNLPTS SGIGFDRSDL AVIAAMNHIG VAMGRKRLVQ KRLASGELVA PFGDMTVKCH QHYYITTLPG RQWPKIEAFI IWLREQVKTT S
Length	311
Mol. Wt	35.332 kDa
pI	7.1 (calculated)
Extinction coefficient	55,920 - 56,545 (calc based on 8 Y, 8 W, and 5 C residues)
edit table

Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	References
Domain	98..308	PF03466 LysR substrate binding domain	PMID:19920124^[6]
Domain	17..76	PF00126 Bacterial regulatory helix-turn-helix protein, lysR family	PMID:19920124^[6]
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=dsdC taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16130296	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:948828	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0007797	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P46068	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG13161	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG13161	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:948828	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120002429	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB2953	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 ^5.2 ^5.3 ^5.4 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
↑ ^6.0 ^6.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

dsdC:Gene Product(s): Difference between revisions

Latest revision as of 20:50, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

@@ Line 18: / Line 18: @@
 |{{Sub}}[[#Localization |Localization]]
 |{{Sub}}[[#Sequence|Sequence]]
+|{{Sub}}[[#Domains/Motifs/Modification Sites|Domains]]
 |{{Sub}}[[#Structure|Structure]]
 |{{Sub}}[[#Gene Product Resources|Resources]]
@@ Line 30: / Line 31: @@
 <!--
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+****************************************************************************************** -->{{Product_nomenclature_help}}
-{|{{Prettytable}}
+{|   id="N46aaa37a0d98b"  class=" tableEdit Product_nomenclature_table"
 |-
-!{{table heading style}} |Standard name
+!align=left {{table heading style}} |Standard name
-|
+||
-DsdC product
+DsdC
 |-
-!{{table heading style}} |Synonyms
+!align=left {{table heading style}} |Synonyms
-|
+||
-DNA-binding transcriptional dual regulator product<ref name='LIB:Riley_2006'/>, B2364 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DsdC product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, D-serine dehydratase (deaminase) transcriptional activator product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+''DNA-binding transcriptional dual regulator<ref name='LIB:Riley_2006'/>, B2364<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DsdC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, D-serine dehydratase (deaminase) transcriptional activator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2360, JW2361, b2364''
 |-
-!{{table heading style}} |Product description
+!align=left {{table heading style}} |Product description
-|
+||
 DsdC transcriptional dual regulator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
+Activator of dsdA transcription<ref name='LIB:EcoGene'/>
 |-
-!{{table heading style}} |EC number (for enzymes)
+!align=left {{table heading style}} |EC number (for enzymes)
-|
+||
-*
-|-
-|colspan='2'|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24953.N46aaa37a0d98b&page=24953&pagename={{FULLPAGENAMEE}} edit table]
+|- class="tableEdit_footer"
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 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.24953.N46aaa37a0d98b-->
-{{Product_nomenclature_help}}
 <protect><!--Nomenclature_notes--></protect>
 ===Notes===
@@ Line 64: / Line 68: @@
 {{BacktoTop}}
 <protect>
-<big>'''Gene Ontology'''</big>
+<big>'''Gene Ontology'''</big><br /><!--box uid=421aa90e079fa326b6494f812ad13e79.24953.N46aaa37b1fd37-->
-<!--box uid=421aa90e079fa326b6494f812ad13e79.24953.N46aaa37b1fd37-->
 <!--
 ******************************************************************************************
@@ Line 71: / Line 74: @@
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_GO_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="N46aaa37b1fd37"  class=" tableEdit GO_table_product dataTable"
 |- {{table_heading_style}}
-!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
+!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
 |-
 |
 |
-[[Category:GO:0003700_!_transcription_factor_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0003700_!_transcription_factor_activity GO:0003700]
+GO:0003677
 |
-transcription_factor_activity
+DNA binding
 |
-[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000002 GO_REF:0000002]<br />
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR000847
+SP_KW:KW-0238
 |
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
+complete
 |-
 |
 |
-[[Category:GO:0003677_!_DNA_binding]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0003677_!_DNA_binding GO:0003677]
+GO:0003700
 |
-DNA_binding
+transcription factor activity
 |
-[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000004 GO_REF:0000004]<br />
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0238
+InterPro:IPR000847
 |
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
+complete
 |-
 |
 |
-[[Category:GO:0009063_!_amino_acid_catabolic_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0009063_!_amino_acid_catabolic_process GO:0009063]
+GO:0006350
 |
-amino acid catabolic process
+transcription
 |
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
+IEA: Inferred from Electronic Annotation
 |
+SP_KW:KW-0804
 |
 P
 |
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
+Seeded from [[EcoCyc]] (v14.0)
 |
-required fields missing
+complete
 |-
 |
 |
-[[Category:GO:0006350_!_transcription]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006350_!_transcription GO:0006350]
+GO:0006355
 |
-transcription
+regulation of transcription, DNA-dependent
 |
-[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000004 GO_REF:0000004]<br />
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-SP_KW:KW-0804
+InterPro:IPR000847
 |
 P
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
+complete
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24953.N46aaa37b1fd37&page=24953&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table]</span> || || || || || || || ||
+|}
+<!--box uid=421aa90e079fa326b6494f812ad13e79.24953.N46aaa37b1fd37-->
+<span id="Interactions"></span><big>'''Interactions'''</big>
+<!--box uid=421aa90e079fa326b6494f812ad13e79.24953.E46aaa38c2adf1-->
+<!--
+******************************************************************************************
+*
+*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
+*
+****************************************************************************************** -->{{Product_interactions_help}}
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="E46aaa38c2adf1"  class=" tableEdit Product_interactions_table dataTable"
+|- {{table heading style}}
+!|Partner Type!!Partner!!Notes!!References!!Evidence
 |-
 |
+Protein
+|
+yghA<br />
 |
-[[Category:GO:0005737_!_cytoplasm]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0005737_!_cytoplasm GO:0005737]
 |
-cytoplasm
+PMID:16606699
 |
+Experiment(s):EBI-1142650<br />
+|-
 |
+Protein
 |
+rmlA2<br />
 |
-C
 |
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
+PMID:16606699
 |
-required fields missing
+Experiment(s):EBI-1142650<br />
 |-
 |
+Protein
 |
-[[Category:GO:0016563_!_transcription_activator_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016563_!_transcription_activator_activity GO:0016563]
+yfeT<br />
 |
-transcription activator activity
 |
+PMID:16606699
 |
+Experiment(s):EBI-1142650<br />
-|
+|-
 |
-F
+Protein
 |
-Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
+groL<br />
-|
-required fields missing
-|-
 |
 |
-[[Category:GO:0006355_!_regulation_of_transcription,_DNA-dependent]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006355_!_regulation_of_transcription,_DNA-dependent GO:0006355]
+PMID:16606699
 |
-regulation_of_transcription,_DNA-dependent
+Experiment(s):EBI-1142650<br />
-|
+|-
-[http://www.geneontology.org/cgi-bin/references.cgi/#GO_REF:0000002 GO_REF:0000002]<br />
 |
-IEA: Inferred from Electronic Annotation
+Protein
 |
-InterPro:IPR000847
+rplO<br />
 |
-P
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+PMID:16606699
 |
+Experiment(s):EBI-1142650<br />
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24953.N46aaa37b1fd37&page=24953&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24953.E46aaa38c2adf1&page=24953&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table]</span> || || || ||
 |}
-<!--box uid=421aa90e079fa326b6494f812ad13e79.24953.N46aaa37b1fd37-->
+<!--box uid=421aa90e079fa326b6494f812ad13e79.24953.E46aaa38c2adf1-->
-{{Product_GO_help}}
-<span id="Interactions"></span><big>'''Interactions'''</big>
-<!--box uid=421aa90e079fa326b6494f812ad13e79.24953.E46aaa38c2adf1-->
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-******************************************************************************************
-*
-*   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
-*
-****************************************************************************************** -->
-{|class = 'sortable' {{Prettytable}} id='168846'
-|- {{table heading style}}
-!Partner Type!!Partner!!Notes
-|-class='sortbottom'
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24953.E46aaa38c2adf1&page=24953&pagename={{FULLPAGENAMEE}} edit table] || ||
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 <!--Function_notes--></protect>
 ===Notes===
@@ Line 239: / Line 240: @@
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_localization_help}}
-{|class = 'sortable' {{Prettytable}} id='114497'
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 |- {{table heading style}}
-!Compartment!!Description!!Evidence!!Notes
+!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
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 <protect><!--Localization_notes--></protect>
@@ Line 263: / Line 265: @@
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_physical_properties_help}}
-{|{{Prettytable}}
+{|   id="G46aaa38e1212c"  class=" tableEdit Product_phys_prop_table"
+|-
+!align=left {{table heading style}} |Name
+||
 |-
-!{{table heading style}} |Sequence
+!align=left {{table heading style}} |Sequence
-|
+||
 [http://biocyc.org/ECOLI/sequence-aa?object=PD00297 at EcoCyc]
 <pre>MEPLREIRNR LLNGWQLSKM HTFEVAARHQ SFALAAEELS LSPSAVSHRI NQLEEELGIQ
@@ Line 279: / Line 286: @@
 IWLREQVKTT S</pre>
 |-
-!{{table heading style}} |Mol. Wt
+!align=left {{table heading style}} |Length
-|
+||
-.33 kDa (calc) <ref name='LIB:EcoCyc10.6'/>
 |-
-!{{table heading style}} |pI
+!align=left {{table heading style}} |Mol. Wt
-|
+||
-.88<ref name='LIB:EcoCyc10.6'/>
+.332 kDa
 |-
-!{{table heading style}} |Extinction coefficient
+!align=left {{table heading style}} |pI
-|
+||
-- 56545 (calc based on 8 Y, 8 W, and 5 C residues)
+.1 (calculated)
 |-
-|colspan='2'|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24953.G46aaa38e1212c&page=24953&pagename={{FULLPAGENAMEE}} edit table]
+!align=left {{table heading style}} |Extinction coefficient
+||
+,920 - 56,545 (calc based on 8 Y, 8 W, and 5 C residues)
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24953.G46aaa38e1212c&page=24953&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.24953.G46aaa38e1212c-->
-{{Product_physical_properties_help}}
-<big>'''Domains/Motifs/Modification Sites'''</big>
-<!--box uid=421aa90e079fa326b6494f812ad13e79.24953.J46aaa38e804c5-->
+<span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span><table>
+<tr align="left" valign="top">
+<td><!--box uid=421aa90e079fa326b6494f812ad13e79.24953.J46aaa38e804c5-->
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_domains_motifs_help}}
-{|class = 'sortable' {{Prettytable}} id='168848'
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="J46aaa38e804c5"  class=" tableEdit Product_motif_table dataTable"
 |- {{table heading style}}
-!Type!!Residues!!Description!!Notes
+!|Type!!Residues!!Description!!Notes!!References
-|-class='sortbottom'
+|-
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24953.J46aaa38e804c5&page=24953&pagename={{FULLPAGENAMEE}} edit table] || || ||
+|
+Domain
+|
+..308
+|
+[http://pfam.janelia.org/family/PF03466 PF03466  LysR substrate binding domain]
+|
+|
+PMID:19920124
+|-
+|
+Domain
+|
+..76
+|
+[http://pfam.janelia.org/family/PF00126 PF00126  Bacterial regulatory helix-turn-helix protein, lysR family]
+|
+|
+PMID:19920124
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24953.J46aaa38e804c5&page=24953&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table]</span> || || || ||
 |}
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-{{Product_domains_motifs_help}}
+<td>
+<!-- motifs column 2-->
+<motif_map/>
+</td>
+</tr>
+</table>
-<span id="Structure"></span><big>'''Structure'''</big>
+<table><tr valign='top'><td>
+<span id='Structure'></span><big>'''Structure'''</big><br />
 <!--box uid=421aa90e079fa326b6494f812ad13e79.24953.X46a83ac5c3f09-->
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_structure_help}}
-{|class = 'sortable' {{Prettytable}} id='114498'
+{|   id="X46a83ac5c3f09"  class=" tableEdit Product_structure_table"
-|- {{table heading style}}
-!Structure Type!!Organism!!Accession!!Residues covered!!Notes
+|-
-|-class='sortbottom'
+!align=left {{table heading style}} |Structures
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24953.X46a83ac5c3f09&page=24953&pagename={{FULLPAGENAMEE}} edit table] || || || ||
+||
+<beststructure>
+gene=dsdC
+taxon=562,83333
+</beststructure>
+|-
+!align=left {{table heading style}} |Models
+||
+View models at:
+* [http://www.proteinmodelportal.org/query/uniprot/P46068 Protein Model Portal]
+* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P46068 PSI-PRED (P46068)]
+* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P46068 Genomes TO Protein (P46068)] (GTOP)
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24953.X46a83ac5c3f09&page=24953&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.24953.X46a83ac5c3f09-->
-{{Product_structure_help}}
-<!--Structure_notes--></protect>
+</td><td></protect>
+==== Structure figures ====
+<protect><!--          ***** PLEASE DO NOT EDIT BELOW THIS LINE *****         -->
+</td><tr><table><!--Structure_notes--></protect>
 ===Notes===
@@ Line 338: / Line 416: @@
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Product_resources_help}}
-{|class = 'sortable' {{Prettytable}} id='168849'
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="X46aaa38f47912"  class=" tableEdit Product_resource_table"
 |- {{table_heading_style}}
-!Resource type!!Source!!Notes/Reference
+!|Resource type!!Source!!Notes/Reference
-|-class='sortbottom'
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24953.X46aaa38f47912&page=24953&pagename={{FULLPAGENAMEE}} edit table] || ||
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24953.X46aaa38f47912&page=24953&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.24953.X46aaa38f47912-->
-{{Product_resources_help}}
 <protect><!--Resources_notes--></protect>
 ===Notes===
@@ Line 359: / Line 438: @@
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->
+****************************************************************************************** -->{{Gene_accessions_help}}
-{|class = 'sortable' {{Prettytable}} id='168850'
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="P46aaa38fa502c"  class=" tableEdit Gene_accessions_table"
 |- {{table_heading_style}}
-!Database!!Accession!!Notes
+!|Database!!Accession!!Notes
 |-
+|
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/16130296 GI:16130296]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/NP_416865.1 GeneID:948828]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[ASAP]]
+|
+ASAP:ABE-0007797
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
 |
-[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
+[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
 |
-[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=PD00297 EcoCyc:PD00297]
+[http://www.uniprot.org/uniprot/P46068 UniProtKB/Swiss-Prot:P46068]
 |
+Escherichia coli str. K-12 substr. MG1655
 |-
 |
-[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+[[EcoCyc]]
 |
-[[uniprot:P46068|UniProt:P46068]]
+EcoCyc:EG13161
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
+[[EcoGene]]
 |
-[http://pfam.sanger.ac.uk/family?acc=PF00126 PFAM:PF00126]
+EcoGene:EG13161
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
 |
-[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_416865 RefSeq:NP_416865]
+[http://www.ncbi.nlm.nih.gov/gene?term=948828 GeneID:948828]
 |
+Escherichia coli str. K-12 substr. MG1655
 |-
 |
-[http://modbase.compbio.ucsf.edu ModBase] ([[ModBase|EcoliWiki Page]])
+[[RegulonDB]]
 |
-[http://salilab.org/modbase/searchbyid?databaseID=P46068 ModBase:P46068]
+RegulonDB:ECK120002429
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
+[[EchoBASE]]
 |
-[http://BioCyc.org/ECOO157/new-image?object=Z0885-MONOMER ECOO157CYC:Z0885-MONOMER]
+EchoBASE:EB2953
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
-|-class='sortbottom'
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24953.P46aaa38fa502c&page=24953&pagename={{FULLPAGENAMEE}} edit table] || ||
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24953.P46aaa38fa502c&page=24953&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.24953.P46aaa38fa502c-->
-{{Product_accessions_help}}
 <protect><!--Accessions_notes--></protect>
 ===Notes===
@@ Line 422: / Line 523: @@
 <!--
 ******************************************************************************************
 *
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
 ****************************************************************************************** -->
-{|class = 'sortable' {{Prettytable}} id='114499'
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="L46a83acb61361"  class=" tableEdit Links_table"
 |- {{table_heading_style}}
-!Name!!URL!!Comments
+!|Name!!URL!!Comments
-|-class='sortbottom'
-|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24953.L46a83acb61361&page=24953&pagename={{FULLPAGENAMEE}} edit table] || ||
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.24953.L46a83acb61361&page=24953&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.24953.L46a83acb61361-->
-{{Links_help}}
@@ Line 441: / Line 543: @@
 {{BacktoTop}}
 {{RefHelp}}
-<references/>
+<references />
 __NOTOC__
-</noinclude>
 ===Categories===
 {{BacktoTop}}
 [[Category:Proteins]]
-[[Category:GO:0009063_!_amino acid catabolic process]][[Category:GO:0006350_!_transcription]][[Category:GO:0005737_!_cytoplasm]][[Category:GO:0016563_!_transcription activator activity]]

dsdC:Gene Product(s): Difference between revisions

Latest revision as of 20:50, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

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