moaC:Gene Product(s): Difference between revisions

Standard name	MoaC
Synonyms	molybdopterin biosynthesis, protein C^[1], B0783^[2]^[1], MoaC^[2]^[1] , ECK0772, JW0766, b0783
Product description	molybdopterin biosynthesis, protein C^[2]^[3] MPT synthesis; chlorate resistance protein C^[4]
EC number (for enzymes)
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0006777	Mo-molybdopterin cofactor biosynthetic process	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_01224	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006777	Mo-molybdopterin cofactor biosynthetic process	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR002820	P	Seeded from EcoCyc (v14.0)	complete
	GO:0006777	Mo-molybdopterin cofactor biosynthetic process	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0501	P	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	References	Evidence
Protein	rplA	PMID:15690043^[5]	Experiment(s):EBI-882449
Protein	djlA	PMID:16606699^[6]	Experiment(s):EBI-1137964
Protein	rpmB	PMID:16606699^[6]	Experiment(s):EBI-1137964
Protein	moaB	PMID:16606699^[6]	Experiment(s):EBI-1137964
Protein	rplQ	PMID:16606699^[6]	Experiment(s):EBI-1137964
Protein	nadE	PMID:16606699^[6]	Experiment(s):EBI-1137964
Protein	rplS	PMID:15690043^[5]	Experiment(s):EBI-889983
Protein	rplV	PMID:15690043^[5]	Experiment(s):EBI-889983
Protein	rpmB	PMID:15690043^[5]	Experiment(s):EBI-889983
Protein	rplS	PMID:19402753^[7]	LCMS(ID Probability):99.6
Protein	rpmB	PMID:19402753^[7]	LCMS(ID Probability):99.6
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
cytoplasm			From EcoCyc^[3]
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MSQLTHINAA GEAHMVDVSA KAETVREARA EAFVTMRSET LAMIIDGRHH KGDVFATARI AGIQAAKRTW DLIPLCHPLM LSKVEVNLQA EPEHNRVRIE TLCRLTGKTG VEMEALTAAS VAALTIYDMC KAVQKDMVIG PVRLLAKSGG KSGDFKVEAD D
Length	161
Mol. Wt	17.466 kDa
pI	7.1 (calculated)
Extinction coefficient	6,990 - 7,365 (calc based on 1 Y, 1 W, and 3 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
Initiator Methionine	1	Removed	UniProt:P0A738
Domain	15..150	PF01967 MoaC family		PMID:19920124^[8]
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=moaC taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16128751	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:945397	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0002673	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P0A738	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG11666	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG11666	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:945397	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120001609	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB1617	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ ^5.0 ^5.1 ^5.2 ^5.3 Butland, G et al. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433 531-7 PubMed
↑ ^6.0 ^6.1 ^6.2 ^6.3 ^6.4 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
↑ ^7.0 ^7.1 Hu, P et al. (2009) Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins. PLoS Biol. 7 e96 PubMed
↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

moaC:Gene Product(s): Difference between revisions

Latest revision as of 20:30, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

@@ Line 35: / Line 35: @@
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@@ Line 44: / Line 44: @@
 !align=left {{table heading style}} |Synonyms
 ||
-molybdopterin biosynthesis, protein C<ref name='LIB:Riley_2006'/>, B0783<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MoaC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+''molybdopterin biosynthesis, protein C<ref name='LIB:Riley_2006'/>, B0783<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MoaC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0772, JW0766, b0783''
 |-
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 |- {{table_heading_style}}
-!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
+!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
 |-
 |
 |
-GO:0005515
+GO:0006777
 |
-protein binding
+Mo-molybdopterin cofactor biosynthetic process
 |
-PMID:15690043
+GOA:hamap<br />GO_REF:0000020
 |
-IPI: Inferred from Physical Interaction
+IEA: Inferred from Electronic Annotation
 |
-UniProtKB:P0A7L0
+HAMAP:MF_01224
 |
-F
+P
 |
-Seeded from EcoCyc <ref name = 'LIB:EcoCyc13.0'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 105: / Line 105: @@
 Mo-molybdopterin cofactor biosynthetic process
 |
-GO_REF:0000002<br />GO_REF:0000004<br />GO_REF:0000020
+GOA:interpro<br />GO_REF:0000002
 |
 IEA: Inferred from Electronic Annotation
 |
-InterPro:IPR002820<br />SP_KW:KW-0501<br />HAMAP:MF_01224
+InterPro:IPR002820
 |
 P
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
-|
-complete
-|-
-|
-|
-GO:0005515
-|
-protein binding
-|
-PMID:15690043
-|
-IPI: Inferred from Physical Interaction
-|
-UniProtKB:P0A7L0
-|
-F
-|
-Seeded from EcoCyc
 |
 complete
@@ Line 143: / Line 124: @@
 Mo-molybdopterin cofactor biosynthetic process
 |
-GO_REF:0000020<br />GO_REF:0000002<br />GO_REF:0000004
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
 |
-HAMAP:MF_01224<br />InterPro:IPR002820<br />SP_KW:KW-0501
+SP_KW:KW-0501
 |
 P
 |
-Seeded from EcoCyc
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
-|-class='sortbottom'
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 |- {{table heading style}}
 !|Partner Type!!Partner!!Notes!!References!!Evidence
@@ Line 270: / Line 251: @@
 |
 Experiment(s):EBI-889983<br />
+|-
+|
+Protein
+|
+rplS
+|
-|-class='sortbottom'
+|
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+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|-
+|
+Protein
+|
+rpmB
+|
+|
+PMID:19402753
+|
+LCMS(ID Probability):99.6
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21359.Y46aa44091f6b7&page=21359&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table]</span> || || || ||
 |}
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 ****************************************************************************************** -->{{Product_localization_help}}
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 |- {{table heading style}}
-!|Compartment!!Description!!Evidence!!Notes
+!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
 |-
 |
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 From EcoCyc<ref name='LIB:EcoCyc11.1'/>
+|
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+|-
+!align=left {{table heading style}} |Name
+||
 |-
@@ Line 348: / Line 357: @@
 ,990 - 7,365 (calc based on 1 Y, 1 W, and 3 C residues)
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 |}
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 *
 ****************************************************************************************** -->{{Product_domains_motifs_help}}
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 |- {{table heading style}}
-!|Type!!Residues!!Description!!Notes
+!|Type!!Residues!!Description!!Notes!!References
+|-
+|
+Initiator Methionine
+|
+|
+Removed
+|
+[http://www.uniprot.org/uniprot/P0A738#section_features UniProt:P0A738]
+|
+|-
+|
+Domain
+|
+..150
+|
+[http://pfam.janelia.org/family/PF01967 PF01967  MoaC family]
+|
-|-class='sortbottom'
+|
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+PMID:19920124
+|- class="tableEdit_footer"
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 |}
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 *
 ****************************************************************************************** -->{{Product_structure_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="E46aa440be9815"  class=" tableEdit Product_structure_table"
 |-
 !align=left {{table heading style}} |Structures
 ||
-<beststructure>moaC
+<beststructure>
-</beststructure>
+gene=moaC
+taxon=562,83333
+</beststructure>
 |-
 !align=left {{table heading style}} |Models
 ||
 View models at:
-* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=moaC&sub=keywordSearc EcoliPredict]
+* [http://www.proteinmodelportal.org/query/uniprot/P0A738 Protein Model Portal]
-* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=moaC&organism=562&organismtext= ModBase]
+* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P0A738 PSI-PRED (P0A738)]
-* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
+* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P0A738 Genomes TO Protein (P0A738)] (GTOP)
-* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
-* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
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+|- class="tableEdit_footer"
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 |- {{table_heading_style}}
 !|Resource type!!Source!!Notes/Reference
-|-class='sortbottom'
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 |}
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 *
 ****************************************************************************************** -->{{Gene_accessions_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="N46aa440d78394"  class=" tableEdit Gene_accessions_table"
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |-
 |
-[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/16128751 GI:16128751]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/NP_415304.1 GeneID:945397]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[ASAP]]
 |
-[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11666-MONOMER EcoCyc:EG11666-MONOMER]
+ASAP:ABE-0002673
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+|
+[http://www.uniprot.org/uniprot/P0A738 UniProtKB/Swiss-Prot:P0A738]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[EcoCyc]]
+|
+EcoCyc:EG11666
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+[[EcoGene]]
 |
-[[uniprot:P0A738|UniProt:P0A738]]
+EcoGene:EG11666
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
 |
-[http://pfam.sanger.ac.uk/family?acc=PF01967 PFAM:PF01967]
+[http://www.ncbi.nlm.nih.gov/gene?term=945397 GeneID:945397]
 |
+Escherichia coli str. K-12 substr. MG1655
 |-
 |
-[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
+[[RegulonDB]]
 |
-[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_415304 RefSeq:NP_415304]
+RegulonDB:ECK120001609
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://www.rcsb.org/pdb PDB] ([[PDB|EcoliWiki Page]])
+[[EchoBASE]]
 |
-[http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=1EKR PDB:1EKR]
+EchoBASE:EB1617
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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+|- class="tableEdit_footer"
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+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21359.N46aa440d78394&page=21359&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
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 |- {{table_heading_style}}
 !|Name!!URL!!Comments
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21359.J46a7d5d4db30a&page=21359&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.21359.J46a7d5d4db30a&page=21359&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
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 {{BacktoTop}}
 [[Category:Proteins]]
-[[Category:GO:0006777_!_Mo-molybdopterin cofactor biosynthetic process]][[Category:Location:cytoplasm]][[Category:Products with structures in PDB]]

moaC:Gene Product(s): Difference between revisions

Latest revision as of 20:30, 17 February 2015

Nomenclature

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Function

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Structure and Physical Properties

Structure figures

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Gene Product Resources

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Accessions in Other Databases

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