yagP:Gene Product(s): Difference between revisions

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!align=left {{table heading style}} |Synonyms
!align=left {{table heading style}} |Synonyms
||
||
predicted transcriptional regulator<ref name='LIB:Riley_2006'/>, B0282<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YagP<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''predicted transcriptional regulator<ref name='LIB:Riley_2006'/>, B0282<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YagP<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0281, JW0276, b4694''
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!align=left {{table heading style}} |Product description
!align=left {{table heading style}} |Product description
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predicted transcriptional regulator LYSR-type<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
predicted transcriptional regulator LYSR-type<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Function unknown<ref name='LIB:EcoGene'/>
|-
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!align=left {{table heading style}} |EC number (for enzymes)
!align=left {{table heading style}} |EC number (for enzymes)
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|- {{table_heading_style}}
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!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
|-
|
|
GO:0006355
|
regulation of transcription, DNA-dependent
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P
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Seeded from EcoCyc 11.1<ref name='LIB:EcoCyc11.1'/>.
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required fields missing 


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!|Partner Type!!Partner!!Notes!!References!!Evidence
!|Partner Type!!Partner!!Notes!!References!!Evidence
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Experiment(s):EBI-1136101<br />  
Experiment(s):EBI-1136101<br />  


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!|Compartment!!Description!!Evidence!!Notes
!|Compartment!!Description!!Evidence!!Reference/Source!!Notes


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!align=left {{table heading style}} |Name
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NDLRLMLRLA LAGGGITIAT QETFRPYIES GKLVSLLDDF LPQFPGFYLY FPQRRNIAPK
NDLRLMLRLA LAGGGITIAT QETFRPYIES GKLVSLLDDF LPQFPGFYLY FPQRRNIAPK
LRALIDYVKE WRQQLA</pre>  
LRALIDYVKE WRQQLA</pre>  
|-
!align=left {{table heading style}} |Length
||
136
|-
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!align=left {{table heading style}} |Mol. Wt
!align=left {{table heading style}} |Mol. Wt
||
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15.41 kDa (calc) <ref name='LIB:EcoCyc10.6'/>
15.411 kDa
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!align=left {{table heading style}} |pI
!align=left {{table heading style}} |pI
||
||
8.6 (calculated)
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!align=left {{table heading style}} |Extinction coefficient
!align=left {{table heading style}} |Extinction coefficient
||
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23950 - 24200 (calc based on 5 Y, 3 W, and 2 C residues)  
23,950 - 24,200 (calc based on 5 Y, 3 W, and 2 C residues)


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<span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span>
<span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span><table>
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!|Type!!Residues!!Description!!Notes
!|Type!!Residues!!Description!!Notes!!References


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<td>
<!-- motifs column 2-->
<motif_map/>
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</table>


<span id="Structure"></span><big>'''Structure'''</big>
<table><tr valign='top'><td>
<span id='Structure'></span><big>'''Structure'''</big><br />
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|-
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!align=left {{table heading style}} |Structures
!align=left {{table heading style}} |Structures
||
||
<beststructure>yagP
<beststructure>
562</beststructure>
gene=yagP
 
taxon=562,83333
</beststructure>
|-
|-
!align=left {{table heading style}} |Models
!align=left {{table heading style}} |Models
||
||
View models at:
View models at:
* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=yagP&sub=keywordSearc EcoliPredict]
* [http://www.proteinmodelportal.org/query/uniprot/P75684 Protein Model Portal]
* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=yagP&organism=562&organismtext= ModBase]
* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P75684 PSI-PRED (P75684)]
* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P75684 Genomes TO Protein (P75684)] (GTOP)
* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)


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<!--Structure_notes--></protect>
</td><td></protect>
==== Structure figures ====
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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===Notes===
===Notes===


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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
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[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
[[ASAP]]
|
ASAP:ABE-0000982
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
|
[http://www.ncbi.nlm.nih.gov/protein/ GeneID:7751633]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
|
[http://www.uniprot.org/uniprot/P75684 UniProtKB/Swiss-Prot:P75684]
|
Escherichia coli str. K-12 substr. MG1655
|-
|
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[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6153-MONOMER EcoCyc:G6153-MONOMER]
[[EcoGene]]
|
|
EcoGene:EG13555
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])  
[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
|
|
[[uniprot:P75684|UniProt:P75684]]
[http://www.ncbi.nlm.nih.gov/gene?term=7751633 GeneID:7751633]
|
|
Escherichia coli str. K-12 substr. MG1655
|-  
|-  
|
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[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
[[EcoCyc]]
|
|
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_414816 RefSeq:NP_414816]
EcoCyc:G6153
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://modbase.compbio.ucsf.edu ModBase] ([[ModBase|EcoliWiki Page]])
[[RegulonDB]]
|
|
[http://salilab.org/modbase/searchbyid?databaseID=P75684 ModBase:P75684]
RegulonDB:ECK120002773
|
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
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[http://BioCyc.org/ECOO157/ ECOO157CYC] ([[ECOO157CYC|EcoliWiki Page]])
[[EchoBASE]]
|
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[http://BioCyc.org/ECOO157/new-image?object=Z0346-MONOMER ECOO157CYC:Z0346-MONOMER]
EchoBASE:EB3325
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
 
{{RefHelp}}
<references/>
<references />
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}
[[Category:Proteins]]
[[Category:Proteins]]
[[Category:GO:0006355_!_regulation of transcription, DNA-dependent]]

Latest revision as of 20:23, 17 February 2015

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Domains Structure Resources Accessions Links References Suggestions

Nomenclature

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Standard name

YagP

Synonyms

predicted transcriptional regulator[1], B0282[2][1], YagP[2][1] , ECK0281, JW0276, b4694

Product description

predicted transcriptional regulator LYSR-type[2][3]

Function unknown[4]

EC number (for enzymes)


edit table


Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
edit table

Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type Partner Notes References Evidence

Protein

intB

PMID:16606699[5]

Experiment(s):EBI-1136101

Protein

dnaK

PMID:16606699[5]

Experiment(s):EBI-1136101

Protein

nrdB

PMID:16606699[5]

Experiment(s):EBI-1136101

Protein

groL

PMID:16606699[5]

Experiment(s):EBI-1136101

Protein

glcC

PMID:16606699[5]

Experiment(s):EBI-1136101

Protein

slyD

PMID:16606699[5]

Experiment(s):EBI-1136101
edit table


Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment Description Evidence Reference/Source Notes
edit table


Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence

at EcoCyc 

MPAPVVLILA AGRGECFLAS GGNTHKCIGW RQSPEVAPYR WPFEENGRTF DLAIEPQITT
NDLRLMLRLA LAGGGITIAT QETFRPYIES GKLVSLLDDF LPQFPGFYLY FPQRRNIAPK
LRALIDYVKE WRQQLA
Length

136

Mol. Wt

15.411 kDa

pI

8.6 (calculated)

Extinction coefficient

23,950 - 24,200 (calc based on 5 Y, 3 W, and 2 C residues)

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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type Residues Description Notes References
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<motif_map/>

Structure
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Structures

<beststructure> gene=yagP taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type Source Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

ASAP

ASAP:ABE-0000982

Escherichia coli str. K-12 substr. MG1655

NCBI (Protein) (EcoliWiki Page)

GeneID:7751633

Escherichia coli str. K-12 substr. MG1655

UniProt (EcoliWiki Page)

UniProtKB/Swiss-Prot:P75684

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13555

Escherichia coli str. K-12 substr. MG1655

NCBI (Gene) (EcoliWiki Page)

GeneID:7751633

Escherichia coli str. K-12 substr. MG1655

EcoCyc

EcoCyc:G6153

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002773

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3325

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 5.2 5.3 5.4 5.5 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed

Categories

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