speE:Gene Product(s): Difference between revisions

Standard name	SpeE
Synonyms	spermidine synthase (putrescine aminopropyltransferase)^[1], B0121^[2]^[1], SpeE^[2]^[1] , ECK0120, JW0117, b0121
Product description	SpeE^[2]^[3]; Component of spermidine synthase^[2]^[3] Spermidine synthase^[4]
EC number (for enzymes)	2.5.1.16^[1]
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Notes

Function

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Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Qualifier	GO ID	GO term name	Reference	Evidence Code	with/from	Aspect	Notes	Status
	GO:0005737	cytoplasm				C	Seeded from Riley et al 2006 ^[1].	Missing: evidence, reference
	GO:0003824	catalytic activity	GOA:interpro GO_REF:0000002	IEA: Inferred from Electronic Annotation	InterPro:IPR001045	F	Seeded from EcoCyc (v14.0)	complete
	GO:0004766	spermidine synthase activity	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_00198	F	Seeded from EcoCyc (v14.0)	complete
	GO:0004766	spermidine synthase activity	GOA:spec GO_REF:0000003	IEA: Inferred from Electronic Annotation	EC:2.5.1.16	F	Seeded from EcoCyc (v14.0)	complete
	GO:0005829	cytosol	PMID:16858726^[5]	IDA: Inferred from Direct Assay		C	Seeded from EcoCyc (v14.0)	complete
	GO:0006596	polyamine biosynthetic process	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0620	P	Seeded from EcoCyc (v14.0)	complete
	GO:0008295	spermidine biosynthetic process	GOA:hamap GO_REF:0000020	IEA: Inferred from Electronic Annotation	HAMAP:MF_00198	P	Seeded from EcoCyc (v14.0)	complete
	GO:0008295	spermidine biosynthetic process	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0745	P	Seeded from EcoCyc (v14.0)	complete
	GO:0016740	transferase activity	GOA:spkw SP_KW:GO_REF:0000004	IEA: Inferred from Electronic Annotation	SP_KW:KW-0808	F	Seeded from EcoCyc (v14.0)	complete
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Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Partner Type	Partner	Notes	References	Evidence
Protein	Subunits of spermidine synthase	could be indirect
Protein	argS		PMID:16606699^[6]	Experiment(s):EBI-1135645
Protein	rpsL		PMID:16606699^[6]	Experiment(s):EBI-1135645
Protein	yacL		PMID:16606699^[6]	Experiment(s):EBI-1135645
Protein	evgA		PMID:16606699^[6]	Experiment(s):EBI-1135645
Protein	nrdI		PMID:16606699^[6]	Experiment(s):EBI-1135645
Protein	groL		PMID:16606699^[6]	Experiment(s):EBI-1135645
Protein	yedD		PMID:16606699^[6]	Experiment(s):EBI-1135645
Protein	cueO		PMID:16606699^[6]	Experiment(s):EBI-1135645
Protein	uspG		PMID:16606699^[6]	Experiment(s):EBI-1135645
Protein	rplN		PMID:16606699^[6]	Experiment(s):EBI-1135645
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Notes

Localization

See Help:Product_localization for how to add or edit information in this section of EcoliWiki.

Compartment	Description	Evidence	Reference/Source	Notes
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Notes

Structure and Physical Properties

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Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Name
Sequence	at EcoCyc MAEKKQWHET LHDQFGQYFA VDNVLYHEKT DHQDLIIFEN AAFGRVMALD GVVQTTERDE FIYHEMMTHV PLLAHGHAKH VLIIGGGDGA MLREVTRHKN VESITMVEID AGVVSFCRQY LPNHNAGSYD DPRFKLVIDD GVNFVNQTSQ TFDVIISDCT DPIGPGESLF TSAFYEGCKR CLNPGGIFVA QNGVCFLQQE EAIDSHRKLS HYFSDVGFYQ AAIPTYYGGI MTFAWATDND ALRHLSTEII QARFLASGLK CRYYNPAIHT AAFALPQYLQ DALASQPS
Length	288
Mol. Wt	32.32 kDa
pI	5.5 (calculated)
Extinction coefficient	30,370 - 31,120 (calc based on 13 Y, 2 W, and 6 C residues)
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Domains/Motifs/Modification Sites

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Type	Residues	Description	Notes	References
Initiator Methionine	1	Removed	UniProt:P09158
Domain	3..247	PF01564 Spermine/spermidine synthase		PMID:19920124^[7]
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<motif_map/>

Structure
See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Structures

<beststructure> gene=speE taxon=562,83333 </beststructure>

Models

View models at:

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Structure figures

Notes

Gene Product Resources

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See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Resource type	Source	Notes/Reference
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Notes

Accessions in Other Databases

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
NCBI (Protein) (EcoliWiki Page)	GI:16128114	Escherichia coli str. K-12 substr. MG1655
NCBI (Protein) (EcoliWiki Page)	GeneID:947726	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0000418	Escherichia coli str. K-12 substr. MG1655
UniProt (EcoliWiki Page)	UniProtKB/Swiss-Prot:P09158	Escherichia coli str. K-12 substr. MG1655
EcoCyc	EcoCyc:EG10963	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10963	Escherichia coli str. K-12 substr. MG1655
NCBI (Gene) (EcoliWiki Page)	GeneID:947726	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000952	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0956	Escherichia coli str. K-12 substr. MG1655
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Notes

Links

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ Lasserre, JP et al. (2006) A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis. Electrophoresis 27 3306-21 PubMed
↑ ^6.00 ^6.01 ^6.02 ^6.03 ^6.04 ^6.05 ^6.06 ^6.07 ^6.08 ^6.09 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
↑ Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed

speE:Gene Product(s): Difference between revisions

Latest revision as of 20:21, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

Categories

Navigation menu

@@ Line 35: / Line 35: @@
 *
 ****************************************************************************************** -->{{Product_nomenclature_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="K46aa1da7dfeda"  class=" tableEdit Product_nomenclature_table"
 |-
@@ Line 44: / Line 44: @@
 !align=left {{table heading style}} |Synonyms
 ||
-spermidine synthase (putrescine aminopropyltransferase)<ref name='LIB:Riley_2006'/>, B0121<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SpeE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+''spermidine synthase (putrescine aminopropyltransferase)<ref name='LIB:Riley_2006'/>, B0121<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SpeE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0120, JW0117, b0121''
 |-
 !align=left {{table heading style}} |Product description
@@ Line 52: / Line 52: @@
 Component of [[:Category:Complex:spermidine synthase|spermidine synthase]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
+Spermidine synthase<ref name='LIB:EcoGene'/>
 |-
 !align=left {{table heading style}} |EC number (for enzymes)
 ||
-** [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.16 2.5.1.16]<ref name='LIB:Riley_2006'/>
+* [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.16 2.5.1.16]<ref name='LIB:Riley_2006'/>
-|-class='sortbottom'
+|- class="tableEdit_footer"
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+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19758.K46aa1da7dfeda&page=19758&pagename={{FULLPAGENAMEE}}&type=1&template=Product_nomenclature_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.19758.K46aa1da7dfeda-->
-{{Product_nomenclature_help}}
 <protect><!--Nomenclature_notes--></protect>
 ===Notes===
@@ Line 69: / Line 70: @@
 {{BacktoTop}}
 <protect>
-<big>'''Gene Ontology'''</big><br />{{Product_GO_help}}<!--box uid=421aa90e079fa326b6494f812ad13e79.19758.G46aa1da93e6ad-->
+<big>'''Gene Ontology'''</big><br /><!--box uid=421aa90e079fa326b6494f812ad13e79.19758.G46aa1da93e6ad-->
 <!--
 ******************************************************************************************
@@ Line 76: / Line 77: @@
 *
 ****************************************************************************************** -->{{Product_GO_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="G46aa1da93e6ad"  class=" tableEdit GO_table_product dataTable"
 |- {{table_heading_style}}
-!|Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
+!|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status
+|-
+|
+|
+GO:0005737
+|
+cytoplasm
+|
+|
+|
+|
+C
+|
+Seeded from Riley et  al 2006 <ref name='LIB:Riley_2006'/>.
+|
+Missing: evidence, reference
+|-
+|
+|
+GO:0003824
+|
+catalytic activity
+|
+GOA:interpro<br />GO_REF:0000002
+|
+IEA: Inferred from Electronic Annotation
+|
+InterPro:IPR001045
+|
+F
+|
+Seeded from [[EcoCyc]] (v14.0)
+|
+complete
 |-
 |
 |
-[[Category:GO:0016740_!_transferase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0016740_!_transferase_activity GO:0016740]
+GO:0004766
 |
-transferase activity
+spermidine synthase activity
 |
-[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
+GOA:hamap<br />GO_REF:0000020
 |
 IEA: Inferred from Electronic Annotation
 |
-[http://www.uniprot.org/keywords/KW-0808 SP_KW:KW-0808]
+HAMAP:MF_00198
 |
 F
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 102: / Line 141: @@
 |
-[[Category:GO:0008295_!_spermidine_biosynthetic_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0008295_!_spermidine_biosynthetic_process GO:0008295]
+GO:0004766
 |
-spermidine biosynthetic process
+spermidine synthase activity
 |
-[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]<br />[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000020 GO_REF:0000020]
+GOA:spec<br />GO_REF:0000003
 |
 IEA: Inferred from Electronic Annotation
 |
-[http://www.uniprot.org/keywords/KW-0745 SP_KW:KW-0745]<br />[http://ca.expasy.org/unirule/MF_00198 HAMAP:MF_00198]
+EC:2.5.1.16
+|
+F
+|
+Seeded from [[EcoCyc]] (v14.0)
+|
+complete
+|-
+|
+|
+GO:0005829
+|
+cytosol
+|
+PMID:16858726
 |
-P
+IDA: Inferred from Direct Assay
+|
+|
+C
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 121: / Line 179: @@
 |
-[[Category:GO:0006596_!_polyamine_biosynthetic_process]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0006596_!_polyamine_biosynthetic_process GO:0006596]
+GO:0006596
 |
 polyamine biosynthetic process
 |
-[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000004 GO_REF:0000004]
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
 |
-[http://www.uniprot.org/keywords/KW-0620 SP_KW:KW-0620]
+SP_KW:KW-0620
 |
 P
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 140: / Line 198: @@
 |
-[[Category:GO:0004766_!_spermidine_synthase_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0004766_!_spermidine_synthase_activity GO:0004766]
+GO:0008295
 |
-spermidine synthase activity
+spermidine biosynthetic process
 |
-[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000003 GO_REF:0000003]<br />[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000020 GO_REF:0000020]
+GOA:hamap<br />GO_REF:0000020
 |
 IEA: Inferred from Electronic Annotation
 |
-[http://www.expasy.org/cgi-bin/nicezyme.pl?2.5.1.16 EC:2.5.1.16]<br />[http://ca.expasy.org/unirule/MF_00198 HAMAP:MF_00198]
+HAMAP:MF_00198
 |
-F
+P
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
@@ Line 159: / Line 217: @@
 |
-[[Category:GO:0003824_!_catalytic_activity]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0003824_!_catalytic_activity GO:0003824]
+GO:0008295
 |
-catalytic activity
+spermidine biosynthetic process
 |
-[http://www.geneontology.org/cgi-bin/references.cgi#GO_REF:0000002 GO_REF:0000002]
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
 IEA: Inferred from Electronic Annotation
 |
-[http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR001045 InterPro:IPR001045]
+SP_KW:KW-0745
 |
-F
+P
 |
-Seeded from EcoCyc 12.5 <ref name = 'LIB:EcoCyc12.5'/>
+Seeded from [[EcoCyc]] (v14.0)
 |
 complete
 |-
 |
 |
-[[Category:GO:0005737_!_cytoplasm]][http://gowiki.tamu.edu/wiki/index.php/Category:GO:0005737_!_cytoplasm GO:0005737]
+GO:0016740
 |
-cytoplasm
+transferase activity
 |
+GOA:spkw<br />SP_KW:GO_REF:0000004
 |
+IEA: Inferred from Electronic Annotation
 |
+SP_KW:KW-0808
 |
-C
+F
 |
-Seeded from Riley et  al 2006 <ref name='LIB:Riley_2006'/>.
+Seeded from [[EcoCyc]] (v14.0)
 |
-required fields missing
+complete
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19758.G46aa1da93e6ad&page=19758&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table] || || || || || || || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19758.G46aa1da93e6ad&page=19758&pagename={{FULLPAGENAMEE}}&type=&template=GO_table_product edit table]</span> || || || || || || || ||
 |}
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@@ Line 207: / Line 265: @@
 *
 ****************************************************************************************** -->{{Product_interactions_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="E46aa1db036ea9"  class=" tableEdit Product_interactions_table dataTable"
 |- {{table heading style}}
 !|Partner Type!!Partner!!Notes!!References!!Evidence
@@ Line 214: / Line 272: @@
 Protein
 |
-[http://www.uniprot.org/uniprot/Subuni Subuni]ts of [[:Category:Complex:spermidine synthase|spermidine synthase]]
+Subunits of [[:Category:Complex:spermidine synthase|spermidine synthase]]
 |
 could be indirect
@@ Line 225: / Line 283: @@
 Protein
 |
-[[argS:Gene_Product(s)|argS]]<br />
+argS<br />
+|
+|
+PMID:16606699
+|
+Experiment(s):EBI-1135645<br />
+|-
+|
+Protein
+|
+rpsL<br />
+|
+|
+PMID:16606699
+|
+Experiment(s):EBI-1135645<br />
+|-
+|
+Protein
+|
+yacL<br />
 |
-|[[PMID:16606699]]<ref name=PMID:16606699/>
 |
-Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1135645 EBI-1135645]<br />
+PMID:16606699
+|
+Experiment(s):EBI-1135645<br />
 |-
 |
 Protein
 |
-[[rpsL:Gene_Product(s)|rpsL]]<br />
+evgA<br />
 |
-|[[PMID:16606699]]<ref name=PMID:16606699/>
 |
-Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1135645 EBI-1135645]<br />
+PMID:16606699
+|
+Experiment(s):EBI-1135645<br />
 |-
 |
 Protein
 |
-[[yacL:Gene_Product(s)|yacL]]<br />
+nrdI<br />
 |
-|[[PMID:16606699]]<ref name=PMID:16606699/>
 |
-Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1135645 EBI-1135645]<br />
+PMID:16606699
+|
+Experiment(s):EBI-1135645<br />
 |-
 |
 Protein
 |
-[[evgA:Gene_Product(s)|evgA]]<br />
+groL<br />
 |
-|[[PMID:16606699]]<ref name=PMID:16606699/>
 |
-Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1135645 EBI-1135645]<br />
+PMID:16606699
+|
+Experiment(s):EBI-1135645<br />
 |-
 |
 Protein
 |
-[[nrdI:Gene_Product(s)|nrdI]]<br />
+yedD<br />
 |
-|[[PMID:16606699]]<ref name=PMID:16606699/>
 |
-Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1135645 EBI-1135645]<br />
+PMID:16606699
+|
+Experiment(s):EBI-1135645<br />
 |-
 |
 Protein
 |
-[[groL:Gene_Product(s)|groL]]<br />
+cueO<br />
 |
-|[[PMID:16606699]]<ref name=PMID:16606699/>
 |
-Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1135645 EBI-1135645]<br />
+PMID:16606699
+|
+Experiment(s):EBI-1135645<br />
 |-
 |
 Protein
 |
-[[yedD:Gene_Product(s)|yedD]]<br />
+uspG<br />
 |
-|[[PMID:16606699]]<ref name=PMID:16606699/>
 |
-Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1135645 EBI-1135645]<br />
+PMID:16606699
+|
+Experiment(s):EBI-1135645<br />
 |-
 |
 Protein
 |
-[[cueO:Gene_Product(s)|cueO]]<br />
+rplN<br />
 |
-|[[PMID:16606699]]<ref name=PMID:16606699/>
 |
-Experiment(s):[http://www.ebi.ac.uk/iintact/search/do/search?searchString=EBI-1135645 EBI-1135645]<br />
+PMID:16606699
+|
+Experiment(s):EBI-1135645<br />
-|-class='sortbottom'
+|- class="tableEdit_footer"
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+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19758.E46aa1db036ea9&page=19758&pagename={{FULLPAGENAMEE}}&type=&template=Product_interactions_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.19758.E46aa1db036ea9-->
-{{Product_interactions_help}}
 <!--Function_notes--></protect>
 ===Notes===
@@ Line 319: / Line 407: @@
 *
 ****************************************************************************************** -->{{Product_localization_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Q46a73343a4223"  class=" tableEdit Product_localization_table"
 |- {{table heading style}}
-!|Compartment!!Description!!Evidence!!Notes
+!|Compartment!!Description!!Evidence!!Reference/Source!!Notes
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19758.Q46a73343a4223&page=19758&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table] || || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19758.Q46a73343a4223&page=19758&pagename={{FULLPAGENAMEE}}&type=&template=Product_localization_table edit table]</span> || || || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.19758.Q46a73343a4223-->
-{{Product_localization_help}}
 <protect><!--Localization_notes--></protect>
@@ Line 344: / Line 432: @@
 *
 ****************************************************************************************** -->{{Product_physical_properties_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="V46aa1db24a74c"  class=" tableEdit Product_phys_prop_table"
+|-
+!align=left {{table heading style}} |Name
+||
 |-
@@ Line 355: / Line 447: @@
 CLNPGGIFVA QNGVCFLQQE EAIDSHRKLS HYFSDVGFYQ AAIPTYYGGI MTFAWATDND
 ALRHLSTEII QARFLASGLK CRYYNPAIHT AAFALPQYLQ DALASQPS</pre>
+|-
+!align=left {{table heading style}} |Length
+||
 |-
 !align=left {{table heading style}} |Mol. Wt
 ||
-.32 kDa (calc) <ref name='LIB:EcoCyc10.6'/>
+.32 kDa
 |-
 !align=left {{table heading style}} |pI
 ||
-.65<ref name='LIB:EcoCyc10.6'/>
+.5 (calculated)
 |-
 !align=left {{table heading style}} |Extinction coefficient
 ||
-- 31120 (calc based on 13 Y, 2 W, and 6 C residues)
+,370 - 31,120 (calc based on 13 Y, 2 W, and 6 C residues)
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19758.V46aa1db24a74c&page=19758&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table] ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19758.V46aa1db24a74c&page=19758&pagename={{FULLPAGENAMEE}}&type=1&template=Product_phys_prop_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.19758.V46aa1db24a74c-->
-{{Product_physical_properties_help}}
-<span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span>
-<!--box uid=421aa90e079fa326b6494f812ad13e79.19758.K46aa1db2a299d-->
+<span id="Domains/Motifs/Modification Sites"><big>'''Domains/Motifs/Modification Sites'''</big></span><table>
+<tr align="left" valign="top">
+<td><!--box uid=421aa90e079fa326b6494f812ad13e79.19758.K46aa1db2a299d-->
 <!--
 ******************************************************************************************
@@ Line 382: / Line 479: @@
 *
 ****************************************************************************************** -->{{Product_domains_motifs_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="K46aa1db2a299d"  class=" tableEdit Product_motif_table dataTable"
 |- {{table heading style}}
-!|Type!!Residues!!Description!!Notes
+!|Type!!Residues!!Description!!Notes!!References
+|-
+|
+Initiator Methionine
+|
+|
+Removed
+|
+[http://www.uniprot.org/uniprot/P09158#section_features UniProt:P09158]
+|
+|-
+|
+Domain
+|
+..247
+|
+[http://pfam.janelia.org/family/PF01564 PF01564  Spermine/spermidine synthase]
+|
-|-class='sortbottom'
+|
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19758.K46aa1db2a299d&page=19758&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table] || || ||
+PMID:19920124
+|- class="tableEdit_footer"
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19758.K46aa1db2a299d&page=19758&pagename={{FULLPAGENAMEE}}&type=&template=Product_motif_table edit table]</span> || || || ||
 |}
-<!--box uid=421aa90e079fa326b6494f812ad13e79.19758.K46aa1db2a299d-->
+<!--box uid=421aa90e079fa326b6494f812ad13e79.19758.K46aa1db2a299d--></td>
-{{Product_domains_motifs_help}}
+<td>
+<!-- motifs column 2-->
+<motif_map/>
+</td>
+</tr>
+</table>
-<span id="Structure"></span><big>'''Structure'''</big>
+<table><tr valign='top'><td>
+<span id='Structure'></span><big>'''Structure'''</big><br />
 <!--box uid=421aa90e079fa326b6494f812ad13e79.19758.R46a733452576d-->
 <!--
@@ Line 400: / Line 526: @@
 *
 ****************************************************************************************** -->{{Product_structure_help}}
-{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{|   id="R46a733452576d"  class=" tableEdit Product_structure_table"
 |-
 !align=left {{table heading style}} |Structures
 ||
-<beststructure>speE
+<beststructure>
-</beststructure>
+gene=speE
+taxon=562,83333
+</beststructure>
 |-
 !align=left {{table heading style}} |Models
 ||
 View models at:
-* [http://dragon.bio.purdue.edu/ecolpredict2/localsearch/cgi-bin/search3.cgi?q=speE&sub=keywordSearc EcoliPredict]
+* [http://www.proteinmodelportal.org/query/uniprot/P09158 Protein Model Portal]
-* [http://modbase.compbio.ucsf.edu/modbase-cgi/model_search.cgi?searchmode=default&displaymode=moddetail&searchproperties=ALL&searchvalue=speE&organism=562&organismtext= ModBase]
+* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P09158 PSI-PRED (P09158)]
-* [http://bioinf.cs.ucl.ac.uk/psipred/ PSI-PRED]
+* [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P09158 Genomes TO Protein (P09158)] (GTOP)
-* [http://www.ebi.ac.uk/msd-srv/pqs/ Protein Quaternary Structure] (PQS)
-* [http://spock.genes.nig.ac.jp/~genome/search.html Genomes TO Protein] (GTOP)
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19758.R46a733452576d&page=19758&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table] ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19758.R46a733452576d&page=19758&pagename={{FULLPAGENAMEE}}&type=1&template=Product_structure_table edit table]</span> ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.19758.R46a733452576d-->
-{{Product_structure_help}}
-<!--Structure_notes--></protect>
+</td><td></protect>
+==== Structure figures ====
+<protect><!--          ***** PLEASE DO NOT EDIT BELOW THIS LINE *****         -->
+</td><tr><table><!--Structure_notes--></protect>
 ===Notes===
@@ Line 437: / Line 582: @@
 *
 ****************************************************************************************** -->{{Product_resources_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="G46aa1db341ac8"  class=" tableEdit Product_resource_table"
 |- {{table_heading_style}}
 !|Resource type!!Source!!Notes/Reference
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19758.G46aa1db341ac8&page=19758&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table] || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19758.G46aa1db341ac8&page=19758&pagename={{FULLPAGENAMEE}}&type=&template=Product_resource_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.19758.G46aa1db341ac8-->
-{{Product_resources_help}}
 <protect><!--Resources_notes--></protect>
 ===Notes===
@@ Line 459: / Line 604: @@
 *
 ****************************************************************************************** -->{{Gene_accessions_help}}
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="J46aa1db38adfb"  class=" tableEdit Gene_accessions_table"
 |- {{table_heading_style}}
 !|Database!!Accession!!Notes
 |-
 |
-[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/16128114 GI:16128114]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]])
+|
+[http://www.ncbi.nlm.nih.gov/protein/NP_414663.1 GeneID:947726]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[ASAP]]
+|
+ASAP:ABE-0000418
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+|
+[http://www.uniprot.org/uniprot/P09158 UniProtKB/Swiss-Prot:P09158]
+|
+Escherichia coli str. K-12 substr. MG1655
+|-
+|
+[[EcoCyc]]
 |
-[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=SPERMIDINESYN-MONOMER EcoCyc:SPERMIDINESYN-MONOMER]
+EcoCyc:EG10963
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]])
+[[EcoGene]]
 |
-[[uniprot:P09158|UniProt:P09158]]
+EcoGene:EG10963
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://pfam.sanger.ac.uk/ PFAM] ([[PFAM|EcoliWiki Page]])
+[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]])
 |
-[http://pfam.sanger.ac.uk/family?acc=PF01564 PFAM:PF01564]
+[http://www.ncbi.nlm.nih.gov/gene?term=947726 GeneID:947726]
 |
+Escherichia coli str. K-12 substr. MG1655
 |-
 |
-[http://www.ncbi.nlm.nih.gov/RefSeq/ RefSeq] ([[RefSeq|EcoliWiki Page]])
+[[RegulonDB]]
 |
-[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=NP_414663 RefSeq:NP_414663]
+RegulonDB:ECK120000952
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 |-
 |
-[http://modbase.compbio.ucsf.edu ModBase] ([[ModBase|EcoliWiki Page]])
+[[EchoBASE]]
 |
-[http://salilab.org/modbase/searchbyid?databaseID=P09158 ModBase:P09158]
+EchoBASE:EB0956
 |
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19758.J46aa1db38adfb&page=19758&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19758.J46aa1db38adfb&page=19758&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.19758.J46aa1db38adfb-->
-{{Product_accessions_help}}
 <protect><!--Accessions_notes--></protect>
 ===Notes===
@@ Line 516: / Line 689: @@
 *
 ****************************************************************************************** -->
-{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"
+{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="V46a733482567e"  class=" tableEdit Links_table"
 |- {{table_heading_style}}
 !|Name!!URL!!Comments
-|-class='sortbottom'
+|- class="tableEdit_footer"
-|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19758.V46a733482567e&page=19758&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
+|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.19758.V46a733482567e&page=19758&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
 |}
 <!--box uid=421aa90e079fa326b6494f812ad13e79.19758.V46a733482567e-->
-{{Links_help}}
@@ Line 532: / Line 705: @@
 {{BacktoTop}}
 {{RefHelp}}
-<references/>
+<references />
 __NOTOC__
-</noinclude>
 ===Categories===
 {{BacktoTop}}
 [[Category:Proteins]]
-[[Category:GO:0005737_!_cytoplasm]][[Category:GO:0006596_!_polyamine biosynthetic process]][[Category:Complex:spermidine synthase]]

speE:Gene Product(s): Difference between revisions

Latest revision as of 20:21, 17 February 2015

Nomenclature

Notes

Function

Notes

Localization

Notes

Structure and Physical Properties

Structure figures

Notes

Gene Product Resources

Notes

Accessions in Other Databases

Notes

Links

References

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