fixC:Gene Product(s): Difference between revisions
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!align=left {{table heading style}} |Synonyms | !align=left {{table heading style}} |Synonyms | ||
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predicted oxidoreductase with FAD/NAD(P)-binding domain<ref name='LIB:Riley_2006'/>, B0043<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YaaS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FixC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ''predicted oxidoreductase with FAD/NAD(P)-binding domain<ref name='LIB:Riley_2006'/>, B0043<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YaaS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FixC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0044, JW0042, yaaS, b0043'' | ||
|- | |- | ||
!align=left {{table heading style}} |Product description | !align=left {{table heading style}} |Product description | ||
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****************************************************************************************** -->{{Product_GO_help}} | ****************************************************************************************** -->{{Product_GO_help}} | ||
{| | {| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="C46aa176fdf23d" class=" tableEdit GO_table_product dataTable" | ||
|- {{table_heading_style}} | |- {{table_heading_style}} | ||
!|Qualifier!!GO ID!!GO term name!!Reference | !|Qualifier!!GO ID!!GO term name!!Reference!!Evidence Code!!with/from!!Aspect!!Notes!!Status | ||
|- | |- | ||
| | | | ||
| | | | ||
GO: | GO:0006810 | ||
| | | | ||
transport | |||
| | | | ||
GO_REF: | GOA:spkw<br />SP_KW:GO_REF:0000004 | ||
| | | | ||
IEA: Inferred from Electronic Annotation | |||
| | | | ||
SP_KW:KW-0813 | |||
| | | | ||
P | |||
| | | | ||
Seeded from [[EcoCyc]] (v14.0) | |||
| | | | ||
complete | complete | ||
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| | | | ||
GO: | GO:0008152 | ||
| | | | ||
metabolic process | |||
| | | | ||
GO_REF: | GOA:interpro<br />GO_REF:0000002 | ||
| | | | ||
IEA: Inferred from Electronic Annotation | |||
| | | | ||
InterPro:IPR003042 | |||
| | | | ||
P | |||
| | | | ||
Seeded from [[EcoCyc]] (v14.0) | |||
| | | | ||
complete | complete | ||
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| | | | ||
GO: | GO:0009437 | ||
| | | | ||
carnitine metabolic process | |||
| | | | ||
PMID:7473063 | |||
| | | | ||
IEP: Inferred from Expression Pattern | |||
| | | | ||
| | | | ||
P | |||
| | | | ||
Seeded from [[EcoCyc]] (v14.0) | |||
| | | | ||
complete | complete | ||
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| | | | ||
GO: | GO:0016491 | ||
| | | | ||
oxidoreductase activity | |||
| | | | ||
GOA:interpro<br />GO_REF:0000002 | |||
| | | | ||
IEA: Inferred from Electronic Annotation | |||
| | | | ||
InterPro:IPR003042 | |||
| | | | ||
F | |||
| | | | ||
Seeded from [[EcoCyc]] (v14.0) | |||
| | | | ||
complete | complete | ||
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| | | | ||
GO: | GO:0016491 | ||
| | | | ||
oxidoreductase activity | |||
| | | | ||
GOA: | GOA:interpro<br />GO_REF:0000002 | ||
| | | | ||
IEA: Inferred from Electronic Annotation | IEA: Inferred from Electronic Annotation | ||
| | | | ||
InterPro:IPR006076 | |||
| | | | ||
F | |||
| | | | ||
Seeded from [[EcoCyc]] (v14.0) | Seeded from [[EcoCyc]] (v14.0) | ||
| | | | ||
complete | |||
|- | |- | ||
| | | | ||
| | | | ||
GO: | GO:0016491 | ||
| | | | ||
oxidoreductase activity | |||
| | | | ||
GOA: | GOA:spkw<br />SP_KW:GO_REF:0000004 | ||
| | | | ||
IEA: Inferred from Electronic Annotation | IEA: Inferred from Electronic Annotation | ||
| | | | ||
SP_KW:KW-0560 | |||
| | | | ||
F | |||
| | | | ||
Seeded from [[EcoCyc]] (v14.0) | Seeded from [[EcoCyc]] (v14.0) | ||
| | | | ||
complete | |||
|- | |- | ||
| | | | ||
| | | | ||
GO: | GO:0022900 | ||
| | | | ||
electron transport chain | |||
| | | | ||
GOA:spkw<br />SP_KW:GO_REF:0000004 | |||
| | | | ||
IEA: Inferred from Electronic Annotation | |||
| | | | ||
SP_KW:KW-0249 | |||
| | | | ||
P | P | ||
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Seeded from [[EcoCyc]] (v14.0) | Seeded from [[EcoCyc]] (v14.0) | ||
| | | | ||
complete | |||
|- | |- | ||
| | | | ||
| | | | ||
GO: | GO:0055114 | ||
| | | | ||
oxidation reduction | |||
| | | | ||
GOA: | GOA:spkw<br />SP_KW:GO_REF:0000004 | ||
| | | | ||
IEA: Inferred from Electronic Annotation | IEA: Inferred from Electronic Annotation | ||
| | | | ||
SP_KW:KW-0560 | |||
| | | | ||
P | |||
| | | | ||
Seeded from [[EcoCyc]] (v14.0) | Seeded from [[EcoCyc]] (v14.0) | ||
| | | | ||
complete | |||
|- | |- | ||
| | | | ||
| | | | ||
GO: | GO:0050660 | ||
| | | | ||
FAD binding | |||
| | | | ||
GO_REF:0000024 | |||
| | | | ||
ISA: Inferred from Sequence Alignment | |||
| | | | ||
UniProtKB:P55931 | |||
| | | | ||
F | F | ||
| | | | ||
PMID:4052375 | |||
PMID:17050691 | |||
| | | | ||
complete | |||
|- | |- | ||
| | | | ||
| | | | ||
GO: | GO:0051536 | ||
| | | | ||
iron-sulfur cluster binding | |||
| | | | ||
GO_REF:0000024 | |||
| | | | ||
ISA: Inferred from Sequence Alignment | |||
| | | | ||
UniProtKB:P55931 | |||
| | | | ||
F | F | ||
| | | | ||
PMID:4052375 | |||
PMID:17050691 | |||
| | | | ||
complete | |||
|- | |- | ||
| | | | ||
| | | | ||
GO: | GO:0004174 | ||
| | | | ||
electron | electron-transferring-flavoprotein dehydrogenase activity | ||
| | | | ||
GO_REF:0000024 | |||
| | | | ||
ISA: Inferred from Sequence Alignment | |||
| | | | ||
UniProtKB:P55931 | |||
| | | | ||
F | |||
| | | | ||
PMID:4052375 | |||
PMID:17050691 | |||
| | | | ||
complete | |||
|- | |- | ||
| | | | ||
| | | | ||
GO: | GO:0009437 | ||
| | | | ||
carnitine metabolic process | |||
| | | | ||
PMID:7473063 | |||
| | | | ||
IEP: Inferred from Expression Pattern | |||
| | | | ||
| | | | ||
P | P | ||
| | | | ||
The ''fixABCX'' operon is adjacent to and regulated similarity to the ''cai'' operon, which is necessary for carnitine metabolism <ref name='PMID:7815937'/>. | |||
| | | | ||
complete | |||
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{| | {| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="C46aa1772915a5" class=" tableEdit Product_interactions_table dataTable" | ||
|- {{table heading style}} | |- {{table heading style}} | ||
!|Partner Type!!Partner!!Notes!!References!!Evidence | !|Partner Type!!Partner!!Notes!!References!!Evidence | ||
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****************************************************************************************** -->{{Product_localization_help}} | ****************************************************************************************** -->{{Product_localization_help}} | ||
{| | {| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="F46a72d3b48c07" class=" tableEdit Product_localization_table" | ||
|- {{table heading style}} | |- {{table heading style}} | ||
!|Compartment!!Description!!Evidence!!Source!!Notes | !|Compartment!!Description!!Evidence!!Reference/Source!!Notes | ||
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****************************************************************************************** -->{{Product_physical_properties_help}} | ****************************************************************************************** -->{{Product_physical_properties_help}} | ||
{| id="O46aa17744b10f" class=" tableEdit Product_phys_prop_table" | {| id="O46aa17744b10f" class=" tableEdit Product_phys_prop_table" | ||
|- | |||
!align=left {{table heading style}} |Name | |||
|| | |||
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****************************************************************************************** -->{{Product_domains_motifs_help}} | ****************************************************************************************** -->{{Product_domains_motifs_help}} | ||
{| | {| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="J46aa1774a2b34" class=" tableEdit Product_motif_table dataTable" | ||
|- {{table heading style}} | |- {{table heading style}} | ||
!|Type!!Residues!!Description!!Notes!!References | !|Type!!Residues!!Description!!Notes!!References | ||
|- | |||
| | |||
Domain | |||
| | |||
7..87 | |||
| | |||
[http://pfam.janelia.org/family/PF01266 PF01266 FAD dependent oxidoreductase] | |||
| | |||
| | |||
PMID:19920124 | |||
|- | |||
| | |||
Domain | |||
| | |||
99..330 | |||
| | |||
[http://pfam.janelia.org/family/PF01266 PF01266 FAD dependent oxidoreductase] | |||
| | |||
| | |||
PMID:19920124 | |||
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View models at: | View models at: | ||
* [http:// | * [http://www.proteinmodelportal.org/query/uniprot/P68644 Protein Model Portal] | ||
* [http://bioinf.cs.ucl.ac.uk/genome3d/read?uniprot_id=P68644 PSI-PRED (P68644)] | |||
* [http://bioinf.cs.ucl.ac.uk/ | * [http://spock.genes.nig.ac.jp/~genome/cgi-bin/gkeytext.pl.cgi?A&QUERY1=P68644 Genomes TO Protein (P68644)] (GTOP) | ||
* [http://spock.genes.nig.ac.jp/~genome/ | |||
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****************************************************************************************** -->{{Product_resources_help}} | ****************************************************************************************** -->{{Product_resources_help}} | ||
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!|Resource type!!Source!!Notes/Reference | !|Resource type!!Source!!Notes/Reference | ||
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****************************************************************************************** -->{{Gene_accessions_help}} | ****************************************************************************************** -->{{Gene_accessions_help}} | ||
{| | {| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="Y46aa177589dc5" class=" tableEdit Gene_accessions_table" | ||
|- {{table_heading_style}} | |- {{table_heading_style}} | ||
!|Database!!Accession!!Notes | !|Database!!Accession!!Notes | ||
|- | |- | ||
| | | | ||
[http:// | [http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]]) | ||
| | |||
[http://www.ncbi.nlm.nih.gov/protein/16128037 GI:16128037] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |||
| | |||
[[ASAP]] | |||
| | |||
ASAP:ABE-0000149 | |||
| | |||
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] | |||
|- | |||
| | |||
[http://www.pir.uniprot.org/ UniProt] ([[UniProt|EcoliWiki Page]]) | |||
| | |||
[http://www.uniprot.org/uniprot/P68644 UniProtKB/Swiss-Prot:P68644] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |||
| | |||
[[EcoCyc]] | |||
| | |||
EcoCyc:EG11564 | |||
| | |||
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] | |||
|- | |||
| | | | ||
[ | [[EcoGene]] | ||
| | | | ||
EcoGene:EG11564 | |||
| | |||
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] | |||
|- | |||
| | |||
[http://www.ncbi.nlm.nih.gov/gene NCBI (Gene)] ([[NCBI (Gene)|EcoliWiki Page]]) | |||
| | |||
[http://www.ncbi.nlm.nih.gov/gene?term=948958 GeneID:948958] | |||
| | |||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |- | ||
| | | | ||
[[RegulonDB]] | |||
| | | | ||
RegulonDB:ECK120001517 | |||
| | | | ||
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] | |||
|- | |- | ||
| | | | ||
[http:// | [http://www.ncbi.nlm.nih.gov/protein NCBI (Protein)] ([[NCBI (Protein)|EcoliWiki Page]]) | ||
| | | | ||
[http:// | [http://www.ncbi.nlm.nig.gov/protein/Array GeneID:948958] | ||
| | | | ||
Escherichia coli str. K-12 substr. MG1655 | |||
|- | |- | ||
| | | | ||
[[EchoBASE]] | |||
| | | | ||
EchoBASE:EB1525 | |||
| | | | ||
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]] | |||
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{| | {| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" id="X46a72d3fbdcdf" class=" tableEdit Links_table" | ||
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{{BacktoTop}} | {{BacktoTop}} | ||
[[Category:Proteins]] | [[Category:Proteins]] | ||
Latest revision as of 20:20, 17 February 2015
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| Nomenclature | Function | Interactions | Localization | Sequence | Domains | Structure | Resources | Accessions | Links | References | Suggestions |
Nomenclature
See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.
| Standard name |
FixC |
|---|---|
| Synonyms |
predicted oxidoreductase with FAD/NAD(P)-binding domain[1], B0043[2][1], YaaS[2][1], FixC[2][1] , ECK0044, JW0042, yaaS, b0043 |
| Product description |
flavoprotein (electron transport), possibly involved in anaerobic carnitine metabolism[2][3] Related to carnitine metabolism; similarity to Rhizobium fix gene[4] |
| EC number (for enzymes) |
|
| edit table |
Notes
Function
Gene Ontology
See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.
| Qualifier | GO ID | GO term name | Reference | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| GO:0006810 |
transport |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0008152 |
metabolic process |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0009437 |
carnitine metabolic process |
IEP: Inferred from Expression Pattern |
P |
Seeded from EcoCyc (v14.0) |
complete | |||
| GO:0016491 |
oxidoreductase activity |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0016491 |
oxidoreductase activity |
GOA:interpro |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0016491 |
oxidoreductase activity |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
F |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0022900 |
electron transport chain |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0055114 |
oxidation reduction |
GOA:spkw |
IEA: Inferred from Electronic Annotation |
P |
Seeded from EcoCyc (v14.0) |
complete | ||
| GO:0050660 |
FAD binding |
ISA: Inferred from Sequence Alignment |
F |
complete | ||||
| GO:0051536 |
iron-sulfur cluster binding |
ISA: Inferred from Sequence Alignment |
F |
complete | ||||
| GO:0004174 |
electron-transferring-flavoprotein dehydrogenase activity |
ISA: Inferred from Sequence Alignment |
F |
complete | ||||
| GO:0009437 |
carnitine metabolic process |
IEP: Inferred from Expression Pattern |
P |
The fixABCX operon is adjacent to and regulated similarity to the cai operon, which is necessary for carnitine metabolism [8]. |
complete | |||
| edit table |
Interactions See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.
| Partner Type | Partner | Notes | References | Evidence |
|---|---|---|---|---|
|
Protein |
narH |
Experiment(s):EBI-1135423 | ||
|
Protein |
dsbC |
Experiment(s):EBI-1135423 | ||
|
Protein |
sdhA |
Experiment(s):EBI-1135423 | ||
|
Protein |
ydjF |
Experiment(s):EBI-1135423 | ||
|
Protein |
caiB |
Experiment(s):EBI-1135423 | ||
|
Protein |
glnG |
Experiment(s):EBI-1135423 | ||
|
Protein |
groL |
Experiment(s):EBI-1135423 | ||
| edit table |
Notes
Localization
See Help:Product_localization for how to add or edit information in this section of EcoliWiki.
| Compartment | Description | Evidence | Reference/Source | Notes |
|---|---|---|---|---|
| edit table |
Notes
Structure and Physical Properties
Physical Properties See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.
| Name | |
|---|---|
| Sequence |
MSEDIFDAII VGAGLAGSVA ALVLAREGAQ VLVIERGNSA GAKNVTGGRL YAHSLEHIIP GFADSAPVER LITHEKLAFM TEKSAMTMDY CNGDETSPSQ RSYSVLRSKF DAWLMEQAEE AGAQLITGIR VDNLVQRDGK VVGVEADGDV IEAKTVILAD GVNSILAEKL GMAKRVKPTD VAVGVKELIE LPKSVIEDRF QLQGNQGAAC LFAGSPTDGL MGGGFLYTNE NTLSLGLVCG LHHLHDAKKS VPQMLEDFKQ HPAVAPLIAG GKLVEYSAHV VPEAGINMLP ELVGDGVLIA GDAAGMCMNL GFTIRGMDLA IAAGEAAAKT VLSAMKSDDF SKQKLAEYRQ HLESGPLRDM RMYQKLPAFL DNPRMFSGYP ELAVGVARDL FTIDGSAPEL MRKKILRHGK KVGFINLIKD GMKGVTVL |
| Length |
428 |
| Mol. Wt |
45.703 kDa |
| pI |
5.9 (calculated) |
| Extinction coefficient |
17,420 - 17,920 (calc based on 8 Y, 1 W, and 4 C residues) |
| edit table |
Domains/Motifs/Modification Sites
|
See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.
|
<motif_map/> |
|
Structure
|
Structure figures
Notes
Gene Product Resources
See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.
| Resource type | Source | Notes/Reference |
|---|---|---|
| edit table |
Notes
Accessions in Other Databases
See Help:Gene_accessions for help with entering information into the Gene Accessions table.
| Database | Accession | Notes |
|---|---|---|
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
|
Escherichia coli str. K-12 substr. MG1655 | ||
| edit table |
Notes
Links
| Name | URL | Comments |
|---|---|---|
| edit table |
References
See Help:References for how to manage references in EcoliWiki.
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 5.0 5.1 Eichler, K et al. (1995) The fix Escherichia coli region contains four genes related to carnitine metabolism. J. Basic Microbiol. 35 217-27 PubMed
- ↑ 6.0 6.1 6.2 Beckmann, JD & Frerman, FE (1985) Electron-transfer flavoprotein-ubiquinone oxidoreductase from pig liver: purification and molecular, redox, and catalytic properties. Biochemistry 24 3913-21 PubMed
- ↑ 7.0 7.1 7.2 Zhang, J et al. (2006) Structure of electron transfer flavoprotein-ubiquinone oxidoreductase and electron transfer to the mitochondrial ubiquinone pool. Proc. Natl. Acad. Sci. U.S.A. 103 16212-7 PubMed
- ↑ Eichler, K et al. (1994) Molecular characterization of the cai operon necessary for carnitine metabolism in Escherichia coli. Mol. Microbiol. 13 775-86 PubMed
- ↑ 9.0 9.1 9.2 9.3 9.4 9.5 9.6 Arifuzzaman, M et al. (2006) Large-scale identification of protein-protein interaction of Escherichia coli K-12. Genome Res. 16 686-91 PubMed
- ↑ 10.0 10.1 Finn, RD et al. (2010) The Pfam protein families database. Nucleic Acids Res. 38 D211-22 PubMed
Categories
- GO:0006810 ! transport
- GO:0008152 ! metabolic process
- GO:0009437 ! carnitine metabolic process
- GO:0016491 ! oxidoreductase activity
- GO:0022900 ! electron transport chain
- GO:0055114 ! oxidation-reduction process
- GO:0050660 ! flavin adenine dinucleotide binding
- GO:0051536 ! iron-sulfur cluster binding
- GO:0004174 ! electron-transferring-flavoprotein dehydrogenase activity
- Proteins